Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 19 869 NP_005913 19 869 XP_005267046 19 869 XP_005267045 19 869 NP_001243143 16 7355 NP_689509 16 7355 NP_001243142 16 7355 NP_000693 16 7355 NP_001153705 16 7355 NP_000692 16 7355 NP_001153706 16 7355 NP_055768 16 7355 NP_001121698 16 7355 NP_065955 16 7355 NP_001154826 16 7355 XP_006723364 16 7355 XP_005259166 16 7355 XP_005259165 16 7355 XP_005259164 16 7355 XP_005259010 16 7355 XP_006719841 16 7355 XP_006710718 16 7355 NP_055928 15 9605 NP_056366 15 9605 NP_056065 15 9605 NP_001273760 15 9605 NP_001273759 15 9605 NP_001003800 15 9605 NP_001259 15 9605 XP_005256618 15 9605 XP_005256617 15 9605 XP_005266301 15 9605 XP_005266299 15 9605 XP_006719822 15 9605 XP_006719821 15 9605 XP_005265092 15 9605 XP_005265091 15 9605>NP_006715 Length = 1558 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NDRLVSIAA 9 NDRL SIAA Sbjct: 1182 NDRLASIAA 1190>NP_005913 Length = 1608 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NDRLVSIAA 9 NDRL SIAA Sbjct: 1232 NDRLASIAA 1240>XP_005267046 Length = 1554 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NDRLVSIAA 9 NDRL SIAA Sbjct: 1178 NDRLASIAA 1186>XP_005267045 Length = 1604 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NDRLVSIAA 9 NDRL SIAA Sbjct: 1228 NDRLASIAA 1236>NP_001243143 Length = 1026 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDRLVSIA 8 N+RL+S+A Sbjct: 849 NERLISMA 856>NP_689509 Length = 1013 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDRLVSIA 8 N+RL+S+A Sbjct: 836 NERLISMA 843>NP_001243142 Length = 1024 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDRLVSIA 8 N+RL+S+A Sbjct: 847 NERLISMA 854>NP_000693 Length = 1020 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDRLVSIA 8 N+RL+S+A Sbjct: 843 NERLISMA 850>NP_001153705 Length = 1023 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDRLVSIA 8 N+RL+S+A Sbjct: 846 NERLISMA 853>NP_000692 Length = 1023 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDRLVSIA 8 N+RL+S+A Sbjct: 846 NERLISMA 853>NP_001153706 Length = 992 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDRLVSIA 8 N+RL+S+A Sbjct: 815 NERLISMA 822>NP_055768 Length = 958 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NDRLVSIAA 9 NDR + +AA Sbjct: 145 NDRAIRVAA 153>NP_001121698 Length = 928 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NDRLVSIAA 9 NDR + +AA Sbjct: 115 NDRAIRVAA 123>NP_065955 Length = 779 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DRLVS+ A Sbjct: 428 DRLVSVRA 435>NP_001154826 Length = 583 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DRLVS+ A Sbjct: 403 DRLVSVRA 410>XP_006723364 Length = 637 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DRLVS+ A Sbjct: 403 DRLVSVRA 410>XP_005259166 Length = 595 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DRLVS+ A Sbjct: 428 DRLVSVRA 435>XP_005259165 Length = 662 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DRLVS+ A Sbjct: 428 DRLVSVRA 435>XP_005259164 Length = 754 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DRLVS+ A Sbjct: 403 DRLVSVRA 410>XP_005259010 Length = 1261 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDRLVSIA 8 N+RL+S+A Sbjct: 836 NERLISMA 843>XP_006719841 Length = 835 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 NDRLVSIAA 9 NDR + +AA Sbjct: 22 NDRAIRVAA 30>XP_006710718 Length = 992 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 NDRLVSIA 8 N+RL+S+A Sbjct: 815 NERLISMA 822>NP_055928 Length = 2961 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 D LVS+AA Sbjct: 934 DTLVSVAA 941>NP_056366 Length = 629 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DRLVSIA 8 DRLVSI+ Sbjct: 248 DRLVSIS 254>NP_056065 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NDRLVSIA 8 N+RL S+A Sbjct: 139 NERLASVA 146>NP_001273760 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DR++ IAA Sbjct: 284 DRIIEIAA 291>NP_001273759 Length = 556 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DR++ IAA Sbjct: 313 DRIIEIAA 320>NP_001003800 Length = 855 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NDRLVSIA 8 N+RL S+A Sbjct: 139 NERLASVA 146>NP_001259 Length = 551 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DR++ IAA Sbjct: 308 DRIIEIAA 315>XP_005256618 Length = 2962 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 D LVS+AA Sbjct: 935 DTLVSVAA 942>XP_005256617 Length = 2966 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 D LVS+AA Sbjct: 935 DTLVSVAA 942>XP_005266301 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DR++ IAA Sbjct: 284 DRIIEIAA 291>XP_005266299 Length = 551 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DR++ IAA Sbjct: 308 DRIIEIAA 315>XP_006719822 Length = 551 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DR++ IAA Sbjct: 308 DRIIEIAA 315>XP_006719821 Length = 561 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 DRLVSIAA 9 DR++ IAA Sbjct: 318 DRIIEIAA 325>XP_005265092 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DRLVSIA 8 DRLVSI+ Sbjct: 70 DRLVSIS 76>XP_005265091 Length = 566 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DRLVSIA 8 DRLVSI+ Sbjct: 185 DRLVSIS 191Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.319 0.129 0.317 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 331,098 Number of extensions: 565 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |