Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 19 869 NP_671714 19 869 XP_006715890 19 869 XP_005250160 19 869 XP_005250159 19 869 NP_065988 16 5631 NP_001135791 16 5631 NP_079479 16 5631 XP_005267986 16 5631 NP_001258828 16 7355 NP_001258877 16 7355 NP_858061 16 7355 NP_858060 16 7355 NP_001258829 16 7355 NP_858064 16 7355 NP_858063 16 7355 NP_858062 16 7355 NP_000391 16 7355 NP_001171062 16 7355 NP_002708 16 7355 NP_060931 16 7355 NP_001278239 16 7355 NP_055467 16 7355 NP_006026 16 7355 XP_005258696 16 7355 XP_005268287 16 7355 XP_005268286 16 7355 XP_005268285 16 7355 XP_005268284 16 7355 XP_006717978 16 7355 XP_005277984 16 7355 XP_005273617 16 7355 XP_005273616 16 7355 XP_003846672 16 7355 NP_950251 15 9605 NP_056315 15 9605 NP_004422 15 9605 NP_055742 15 9605 NP_001162118 15 9605 XP_005274525 15 9605 XP_005261164 15 9605 XP_005261166 15 9605 XP_005261163 15 9605 XP_005245809 15 9605 XP_005245808 15 9605>NP_005742 Length = 3907 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NDEISVSSM 9 +DEISVSSM Sbjct: 1566 HDEISVSSM 1574>NP_671714 Length = 3899 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NDEISVSSM 9 +DEISVSSM Sbjct: 1566 HDEISVSSM 1574>XP_006715890 Length = 3860 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NDEISVSSM 9 +DEISVSSM Sbjct: 1566 HDEISVSSM 1574>XP_005250160 Length = 3939 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NDEISVSSM 9 +DEISVSSM Sbjct: 1566 HDEISVSSM 1574>XP_005250159 Length = 3952 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NDEISVSSM 9 +DEISVSSM Sbjct: 1566 HDEISVSSM 1574>NP_065988 Length = 2048 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 NDEISVSS 8 NDE SVSS Sbjct: 950 NDEKSVSS 957>NP_001135791 Length = 622 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NDEISVSS 8 N E+SVSS Sbjct: 270 NSEVSVSS 277>NP_079479 Length = 721 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NDEISVSS 8 N E+SVSS Sbjct: 270 NSEVSVSS 277>XP_005267986 Length = 2022 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 NDEISVSS 8 NDE SVSS Sbjct: 924 NDEKSVSS 931>NP_001258828 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 408 DEISVDSL 415>NP_001258877 Length = 432 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 391 DEISVDSL 398>NP_858061 Length = 549 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 508 DEISVDSL 515>NP_858060 Length = 509 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 468 DEISVDSL 475>NP_001258829 Length = 501 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 460 DEISVDSL 467>NP_858064 Length = 432 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 391 DEISVDSL 398>NP_858063 Length = 423 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 382 DEISVDSL 389>NP_858062 Length = 446 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 405 DEISVDSL 412>NP_000391 Length = 760 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 NDEISVSS 8 ND++++SS Sbjct: 499 NDQVAISS 506>NP_001171062 Length = 457 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 416 DEISVDSL 423>NP_002708 Length = 447 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 406 DEISVDSL 413>NP_060931 Length = 453 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 412 DEISVDSL 419>NP_001278239 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 247 DEISVDSL 254>NP_055467 Length = 963 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NDEISVSSM 9 N E+SVSS+ Sbjct: 540 NPELSVSSV 548>NP_006026 Length = 1711 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NDEISVSSM 9 +DE SVSS+ Sbjct: 1151 DDEFSVSSV 1159>XP_005258696 Length = 736 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 NDEISVSS 8 ND++++SS Sbjct: 475 NDQVAISS 482>XP_005268287 Length = 1490 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NDEISVSSM 9 +DE SVSS+ Sbjct: 1168 DDEFSVSSV 1176>XP_005268286 Length = 1685 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NDEISVSSM 9 +DE SVSS+ Sbjct: 1125 DDEFSVSSV 1133>XP_005268285 Length = 1702 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NDEISVSSM 9 +DE SVSS+ Sbjct: 1142 DDEFSVSSV 1150>XP_005268284 Length = 1728 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NDEISVSSM 9 +DE SVSS+ Sbjct: 1168 DDEFSVSSV 1176>XP_006717978 Length = 226 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 185 DEISVDSL 192>XP_005277984 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 247 DEISVDSL 254>XP_005273617 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 247 DEISVDSL 254>XP_005273616 Length = 446 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DEISV S+ Sbjct: 405 DEISVDSL 412>XP_003846672 Length = 830 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 NDEISVSSM 9 N E+SVSS+ Sbjct: 540 NPELSVSSV 548>NP_950251 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DE+S SSM Sbjct: 449 DELSESSM 456>NP_056315 Length = 696 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DE+S SSM Sbjct: 604 DELSESSM 611>NP_004422 Length = 976 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DEISVSS 8 DEI+VSS Sbjct: 148 DEITVSS 154>NP_055742 Length = 1034 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NDEISVSS 8 ND +S+SS Sbjct: 1007 NDPLSISS 1014>NP_001162118 Length = 1004 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NDEISVSS 8 ND +S+SS Sbjct: 977 NDPLSISS 984>XP_005274525 Length = 985 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 NDEISVSS 8 ND +S+SS Sbjct: 958 NDPLSISS 965>XP_005261164 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DE+S SSM Sbjct: 449 DELSESSM 456>XP_005261166 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DE+S SSM Sbjct: 449 DELSESSM 456>XP_005261163 Length = 614 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 DEISVSSM 9 DE+S SSM Sbjct: 522 DELSESSM 529>XP_005245809 Length = 922 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DEISVSS 8 DEI+VSS Sbjct: 94 DEITVSS 100>XP_005245808 Length = 965 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 DEISVSS 8 DEI+VSS Sbjct: 137 DEITVSS 143Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.292 0.108 0.242 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 405,708 Number of extensions: 540 Number of successful extensions: 45 Number of sequences better than 10000.0: 45 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 45 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |