Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245200 20 509 NP_000240 20 509 NP_001161089 20 509 NP_005352 16 5631 NP_705692 16 5631 NP_786884 16 5631 NP_001269431 16 5631 NP_001269434 16 5631 NP_786885 16 5631 NP_001269433 16 5631 NP_001269430 16 5631 XP_006724877 16 5631 XP_005277896 16 5631 XP_005277895 16 5631 XP_005277893 16 5631 NP_001165783 15 9605 NP_002661 15 9605 NP_001138791 15 9605 XP_006713725 15 9605 XP_006713724 15 9605 XP_006713723 15 9605 XP_005270768 15 9605 NP_036448 15 9605>NP_001245200 Length = 687 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NAVSREMIE 9 NAVSRE+IE Sbjct: 222 NAVSRELIE 230>NP_000240 Length = 756 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NAVSREMIE 9 NAVSRE+IE Sbjct: 222 NAVSRELIE 230>NP_001161089 Length = 658 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NAVSREMIE 9 NAVSRE+IE Sbjct: 124 NAVSRELIE 132>NP_005352 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVSREMIE 9 A+SR+M+E Sbjct: 108 AISRKMVE 115>NP_705692 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVSREMIE 9 A+SR+M+E Sbjct: 108 AISRKMVE 115>NP_786884 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVSREMIE 9 A+SR+M+E Sbjct: 108 AISRKMVE 115>NP_001269431 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVSREMIE 9 A+SR+M+E Sbjct: 108 AISRKMVE 115>NP_001269434 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVSREMIE 9 A+SR+M+E Sbjct: 108 AISRKMVE 115>NP_786885 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVSREMIE 9 A+SR+M+E Sbjct: 108 AISRKMVE 115>NP_001269433 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVSREMIE 9 A+SR+M+E Sbjct: 108 AISRKMVE 115>NP_001269430 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVSREMIE 9 A+SR+M+E Sbjct: 108 AISRKMVE 115>XP_006724877 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVSREMIE 9 A+SR+M+E Sbjct: 108 AISRKMVE 115>XP_005277896 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVSREMIE 9 A+SR+M+E Sbjct: 108 AISRKMVE 115>XP_005277895 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVSREMIE 9 A+SR+M+E Sbjct: 108 AISRKMVE 115>XP_005277893 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 AVSREMIE 9 A+SR+M+E Sbjct: 108 AISRKMVE 115>NP_001165783 Length = 629 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAVSREMI 8 NAV +EMI Sbjct: 563 NAVRQEMI 570>NP_002661 Length = 629 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAVSREMI 8 NAV +EMI Sbjct: 563 NAVRQEMI 570>NP_001138791 Length = 629 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAVSREMI 8 NAV +EMI Sbjct: 563 NAVRQEMI 570>XP_006713725 Length = 629 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAVSREMI 8 NAV +EMI Sbjct: 563 NAVRQEMI 570>XP_006713724 Length = 629 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAVSREMI 8 NAV +EMI Sbjct: 563 NAVRQEMI 570>XP_006713723 Length = 629 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAVSREMI 8 NAV +EMI Sbjct: 563 NAVRQEMI 570>XP_005270768 Length = 566 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 NAVSREMIE 9 + ++REM+E Sbjct: 109 SVITREMVE 117>NP_036448 Length = 536 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 NAVSREMIE 9 + ++REM+E Sbjct: 79 SVITREMVE 87Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.118 0.273 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 288,512 Number of extensions: 298 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |