Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001167558 19 665 NP_858045 19 665 NP_006525 19 665 NP_001167559 19 665 NP_060119 16 5631 NP_951058 16 5631 NP_940978 15 9605 NP_001275882 15 9605 NP_065191 15 9605 NP_001275884 15 9605 NP_001275880 15 9605 NP_079019 15 9605 NP_066962 15 9605 NP_001099147 15 9605 XP_006725063 15 9605 XP_006714368 15 9605 XP_005265758 15 9605 XP_005264496 15 9605 XP_006710698 15 9605 XP_005244806 15 9605 XP_006710697 15 9605 XP_006710696 15 9605 NP_001239204 15 9605 NP_001239203 15 9605 NP_006789 15 9605>NP_001167558 Length = 1423 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NAMMLSRMG 9 NAMM SRMG Sbjct: 1332 NAMMSSRMG 1340>NP_858045 Length = 1424 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NAMMLSRMG 9 NAMM SRMG Sbjct: 1333 NAMMSSRMG 1341>NP_006525 Length = 1420 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NAMMLSRMG 9 NAMM SRMG Sbjct: 1329 NAMMSSRMG 1337>NP_001167559 Length = 1415 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 NAMMLSRMG 9 NAMM SRMG Sbjct: 1324 NAMMSSRMG 1332>NP_060119 Length = 875 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAMMLSRM 8 NA+M SRM Sbjct: 814 NALMASRM 821>NP_951058 Length = 853 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAMMLSRM 8 NA+M SRM Sbjct: 792 NALMASRM 799>NP_940978 Length = 2045 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NAMMLSRMG 9 NA+ LSR G Sbjct: 402 NAVCLSRRG 410>NP_001275882 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MMLSRMG 9 +MLSR+G Sbjct: 753 LMLSRLG 759>NP_065191 Length = 858 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MMLSRMG 9 +MLSR+G Sbjct: 787 LMLSRLG 793>NP_001275884 Length = 504 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MMLSRMG 9 +MLSR+G Sbjct: 433 LMLSRLG 439>NP_001275880 Length = 882 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MMLSRMG 9 +MLSR+G Sbjct: 811 LMLSRLG 817>NP_079019 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAMMLSRM 8 NAM LSR+ Sbjct: 439 NAMRLSRI 446>NP_066962 Length = 528 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAMMLSRM 8 NAM LSR+ Sbjct: 441 NAMKLSRI 448>NP_001099147 Length = 536 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAMMLSRM 8 NAM LSR+ Sbjct: 448 NAMRLSRI 455>XP_006725063 Length = 289 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAMMLSRM 8 NAM LSR+ Sbjct: 201 NAMRLSRI 208>XP_006714368 Length = 289 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAMMLSRM 8 NAM LSR+ Sbjct: 201 NAMRLSRI 208>XP_005265758 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAMMLSRM 8 NAM LSR+ Sbjct: 215 NAMKLSRI 222>XP_005264496 Length = 739 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MMLSRMG 9 +MLSR+G Sbjct: 668 LMLSRLG 674>XP_006710698 Length = 1907 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NAMMLSRMG 9 NA+ LSR G Sbjct: 402 NAVCLSRRG 410>XP_005244806 Length = 2049 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NAMMLSRMG 9 NA+ LSR G Sbjct: 402 NAVCLSRRG 410>XP_006710697 Length = 2053 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NAMMLSRMG 9 NA+ LSR G Sbjct: 402 NAVCLSRRG 410>XP_006710696 Length = 2057 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NAMMLSRMG 9 NA+ LSR G Sbjct: 402 NAVCLSRRG 410>NP_001239204 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAMMLSRM 8 NAM LSR+ Sbjct: 439 NAMRLSRI 446>NP_001239203 Length = 693 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAMMLSRM 8 NAM LSR+ Sbjct: 605 NAMRLSRI 612>NP_006789 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 NAMMLSRM 8 NAM LSR+ Sbjct: 439 NAMRLSRI 446Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.126 0.336 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 206,018 Number of extensions: 143 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |