Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006209 19 665 XP_006713721 19 665 NP_570719 16 5631 NP_065394 16 7355 NP_004384 16 7355 NP_001171110 16 7355 NP_001171113 16 7355 NP_001171114 16 7355 NP_001159400 16 7355 NP_001171111 16 7355 NP_001171112 16 7355 NP_001171115 16 7355 NP_001171107 16 7355 NP_001171105 16 7355 NP_001171106 16 7355 NP_001171109 16 7355 NP_001171108 16 7355 NP_001070884 15 9605 NP_001230814 15 9605 NP_001230806 15 9605 NP_005740 15 9605 NP_073741 15 9605 NP_057558 15 9605>NP_006209 Length = 1068 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NAGLSNRLA 9 +AGLSNRLA Sbjct: 510 HAGLSNRLA 518>XP_006713721 Length = 1068 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 NAGLSNRLA 9 +AGLSNRLA Sbjct: 510 HAGLSNRLA 518>NP_570719 Length = 217 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 NAGLSNRLA 9 NAGL RLA Sbjct: 40 NAGLDLRLA 48>NP_065394 Length = 580 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GLSNRLA 9 GLSN+LA Sbjct: 84 GLSNQLA 90>NP_004384 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001171110 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001171113 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001171114 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001159400 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001171111 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001171112 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001171115 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001171107 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001171105 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001171106 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001171109 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001171108 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AGLSNRLA 9 AGLS R+A Sbjct: 675 AGLSRRIA 682>NP_001070884 Length = 369 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 AGLSNRL 8 AGL NRL Sbjct: 86 AGLPNRL 92>NP_001230814 Length = 206 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NAGLSNRLA 9 N+G SN++A Sbjct: 55 NSGRSNKVA 63>NP_001230806 Length = 345 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NAGLSNRLA 9 N+G SN++A Sbjct: 194 NSGRSNKVA 202>NP_005740 Length = 345 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 NAGLSNRLA 9 N+G SN++A Sbjct: 194 NSGRSNKVA 202>NP_073741 Length = 912 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 NAGLSNRLA 9 + LSNRLA Sbjct: 419 DVSLSNRLA 427>NP_057558 Length = 467 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 NAGLSNR 7 N G+SNR Sbjct: 58 NVGVSNR 64Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.123 0.321 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 442,071 Number of extensions: 457 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |