Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003290 18 1135 NP_001268885 17 4312 NP_443128 17 4312 NP_008862 16 5631 NP_001273685 16 7355 NP_037499 16 7355 XP_005248216 16 7355 XP_006714024 16 7355 NP_001244950 15 9605 NP_001244948 15 9605 NP_001244949 15 9605 NP_001244951 15 9605 NP_001244952 15 9605 NP_000818 15 9605 NP_001107655 15 9605 NP_015564 15 9605 NP_001070711 15 9605 XP_005258567 15 9605 XP_006718886 15 9605 XP_005271575 15 9605 NP_000820 15 9605 NP_000819 15 9605 NP_789780 15 9605 NP_001077088 15 9605 NP_000817 15 9605 NP_001077089 15 9605>NP_003290 Length = 803 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TITLVLKE 9 TITLVLKE Sbjct: 246 TITLVLKE 253>NP_001268885 Length = 3631 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TITLVLKE 9 TIT VLKE Sbjct: 769 TITCVLKE 776>NP_443128 Length = 3487 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TITLVLKE 9 TIT VLKE Sbjct: 729 TITCVLKE 736>NP_008862 Length = 496 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 MTITLVLKE 9 MT++L+LK+ Sbjct: 349 MTVSLLLKD 357>NP_001273685 Length = 809 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TITLVLKE 9 T+T+VLK+ Sbjct: 649 TVTVVLKD 656>NP_037499 Length = 808 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TITLVLKE 9 T+T+VLK+ Sbjct: 648 TVTVVLKD 655>XP_005248216 Length = 441 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TITLVLKE 9 T+T+VLK+ Sbjct: 281 TVTVVLKD 288>XP_006714024 Length = 785 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TITLVLKE 9 T+T+VLK+ Sbjct: 625 TVTVVLKD 632>NP_001244950 Length = 916 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 503 LTITLVREE 511>NP_001244948 Length = 826 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 413 LTITLVREE 421>NP_001244949 Length = 811 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 398 LTITLVREE 406>NP_001244951 Length = 916 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 503 LTITLVREE 511>NP_001244952 Length = 837 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 424 LTITLVREE 432>NP_000818 Length = 906 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 493 LTITLVREE 501>NP_001107655 Length = 906 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 493 LTITLVREE 501>NP_015564 Length = 894 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 509 LTITLVREE 517>NP_001070711 Length = 884 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 501 LTITLVREE 509>XP_005258567 Length = 1036 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 MTITLVLK 8 MT+ L+LK Sbjct: 796 MTVPLILK 803>XP_006718886 Length = 902 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 501 LTITLVREE 509>XP_005271575 Length = 902 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 501 LTITLVREE 509>NP_000820 Length = 902 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 501 LTITLVREE 509>NP_000819 Length = 894 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 509 LTITLVREE 517>NP_789780 Length = 1043 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 MTITLVLK 8 MT+ L+LK Sbjct: 796 MTVPLILK 803>NP_001077088 Length = 883 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 500 LTITLVREE 508>NP_000817 Length = 883 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 500 LTITLVREE 508>NP_001077089 Length = 836 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MTITLVLKE 9 +TITLV +E Sbjct: 453 LTITLVREE 461Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.136 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 341,287 Number of extensions: 358 Number of successful extensions: 26 Number of sequences better than 10000.0: 26 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 26 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |