Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 19 665 XP_005262424 19 665 NP_689777 17 3301 NP_060360 17 3301 NP_056058 17 3301 XP_006716574 17 3301 XP_006716573 17 3301 XP_005250858 17 3301 XP_005250857 17 3301 NP_001714 15 9605 NP_149020 15 9605 NP_149438 15 9605 NP_001014765 15 9605 XP_006724673 15 9605 XP_005249383 15 9605 XP_006711109 15 9605 XP_006711108 15 9605 XP_005263595 15 9605 XP_006711107 15 9605 NP_061979 15 9605 NP_001070710 15 9605 NP_663786 15 9605>NP_722576 Length = 3080 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 MTIQEKST 8 MTIQEKST Sbjct: 234 MTIQEKST 241>XP_005262424 Length = 2875 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 MTIQEKST 8 MTIQEKST Sbjct: 29 MTIQEKST 36>NP_689777 Length = 3997 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TIQEKST 8 T+QEKST Sbjct: 568 TVQEKST 574>NP_060360 Length = 4022 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TIQEKST 8 T+QEKST Sbjct: 568 TVQEKST 574>NP_056058 Length = 863 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TIQEKST 8 T+QEKST Sbjct: 568 TVQEKST 574>XP_006716574 Length = 968 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TIQEKST 8 T+QEKST Sbjct: 568 TVQEKST 574>XP_006716573 Length = 1776 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TIQEKST 8 T+QEKST Sbjct: 568 TVQEKST 574>XP_005250858 Length = 4022 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TIQEKST 8 T+QEKST Sbjct: 568 TVQEKST 574>XP_005250857 Length = 4022 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 TIQEKST 8 T+QEKST Sbjct: 568 TVQEKST 574>NP_001714 Length = 2649 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 IQEKSTA 9 IQ+KSTA Sbjct: 1867 IQKKSTA 1873>NP_149020 Length = 1395 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 MTIQEKST 8 + +QEKST Sbjct: 711 LALQEKST 718>NP_149438 Length = 255 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TIQEKSTA 9 TIQ+KS A Sbjct: 197 TIQQKSDA 204>NP_001014765 Length = 255 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TIQEKSTA 9 TIQ+KS A Sbjct: 197 TIQQKSDA 204>XP_006724673 Length = 1396 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 MTIQEKST 8 + +QEKST Sbjct: 711 LALQEKST 718>XP_005249383 Length = 3186 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 IQEKSTA 9 IQ+KSTA Sbjct: 2404 IQKKSTA 2410>XP_006711109 Length = 255 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TIQEKSTA 9 TIQ+KS A Sbjct: 197 TIQQKSDA 204>XP_006711108 Length = 255 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TIQEKSTA 9 TIQ+KS A Sbjct: 197 TIQQKSDA 204>XP_005263595 Length = 255 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TIQEKSTA 9 TIQ+KS A Sbjct: 197 TIQQKSDA 204>XP_006711107 Length = 255 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TIQEKSTA 9 TIQ+KS A Sbjct: 197 TIQQKSDA 204>NP_061979 Length = 350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MTIQEKS 7 MT++EKS Sbjct: 212 MTLEEKS 218>NP_001070710 Length = 511 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TIQEKSTA 9 T+QEK+ A Sbjct: 3 TVQEKAAA 10>NP_663786 Length = 358 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MTIQEKS 7 MT++EKS Sbjct: 212 MTLEEKS 218Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.297 0.102 0.225 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 429,253 Number of extensions: 163 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |