Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_789765                                                              21     175
NP_001123914                                                           21     175
NP_005334                                                              21     175
NP_004976                                                              21     175
NP_203524                                                              21     175
NP_002515                                                              21     175
XP_006725199                                                           21     175
XP_006719132                                                           21     175
XP_006718280                                                           21     175
NP_001078518                                                           20     509
NP_036351                                                              20     509
NP_001239021                                                           20     509
NP_001239022                                                           20     509
NP_001239020                                                           20     509
NP_001239019                                                           20     509
NP_001170785                                                           20     509
NP_036382                                                              20     509
NP_001170786                                                           20     509
NP_001096139                                                           20     509
XP_005247286                                                           20     509
XP_005247285                                                           20     509
NP_001243749                                                           19     665
NP_001243750                                                           19     665
NP_008843                                                              19     665
NP_006261                                                              18    1935
NP_055568                                                              17    2528
XP_005271906                                                           17    2528
XP_006718144                                                           17    2528
XP_005271905                                                           17    2528
XP_005271904                                                           17    2528
XP_005271903                                                           17    2528
NP_689967                                                              17    3301
NP_006176                                                              16    5631
NP_001273490                                                           16    5631
XP_006718633                                                           16    5631
XP_006718632                                                           16    5631
XP_006718631                                                           16    5631
XP_006718630                                                           16    5631
XP_006718629                                                           16    5631
XP_006718628                                                           16    5631
XP_006718627                                                           16    5631
XP_006718626                                                           16    5631
XP_006718625                                                           16    5631
NP_001243624                                                           16    7355
NP_002832                                                              15    9605
NP_001034680                                                           15    9605
NP_000290                                                              15    9605
NP_001034679                                                           15    9605
NP_001005337                                                           15    9605
XP_005272733                                                           15    9605
XP_005272732                                                           15    9605
XP_005265410                                                           15    9605
XP_005265409                                                           15    9605
>NP_789765
          Length = 170

 Score = 21.2 bits (43), Expect =   175
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M DQYMRTG
Sbjct: 67 MRDQYMRTG 75
>NP_001123914
          Length = 189

 Score = 21.2 bits (43), Expect =   175
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M DQYMRTG
Sbjct: 67 MRDQYMRTG 75
>NP_005334
          Length = 189

 Score = 21.2 bits (43), Expect =   175
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M DQYMRTG
Sbjct: 67 MRDQYMRTG 75
>NP_004976
          Length = 188

 Score = 21.2 bits (43), Expect =   175
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M DQYMRTG
Sbjct: 67 MRDQYMRTG 75
>NP_203524
          Length = 189

 Score = 21.2 bits (43), Expect =   175
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M DQYMRTG
Sbjct: 67 MRDQYMRTG 75
>NP_002515
          Length = 189

 Score = 21.2 bits (43), Expect =   175
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M DQYMRTG
Sbjct: 67 MRDQYMRTG 75
>XP_006725199
          Length = 170

 Score = 21.2 bits (43), Expect =   175
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M DQYMRTG
Sbjct: 67 MRDQYMRTG 75
>XP_006719132
          Length = 189

 Score = 21.2 bits (43), Expect =   175
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M DQYMRTG
Sbjct: 67 MRDQYMRTG 75
>XP_006718280
          Length = 170

 Score = 21.2 bits (43), Expect =   175
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M DQYMRTG
Sbjct: 67 MRDQYMRTG 75
>NP_001078518
          Length = 208

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M +QYMRTG
Sbjct: 77 MREQYMRTG 85
>NP_036351
          Length = 208

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M +QYMRTG
Sbjct: 77 MREQYMRTG 85
>NP_001239021
          Length = 132

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1 MTDQYMRTG 9
         M +QYMRTG
Sbjct: 1 MREQYMRTG 9
>NP_001239022
          Length = 132

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1 MTDQYMRTG 9
         M +QYMRTG
Sbjct: 1 MREQYMRTG 9
>NP_001239020
          Length = 132

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1 MTDQYMRTG 9
         M +QYMRTG
Sbjct: 1 MREQYMRTG 9
>NP_001239019
          Length = 208

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M +QYMRTG
Sbjct: 77 MREQYMRTG 85
>NP_001170785
          Length = 169

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M +QYMRTG
Sbjct: 43 MREQYMRTG 51
>NP_036382
          Length = 204

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M +QYMRTG
Sbjct: 78 MREQYMRTG 86
>NP_001170786
          Length = 127

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1 MTDQYMRTG 9
         M +QYMRTG
Sbjct: 1 MREQYMRTG 9
>NP_001096139
          Length = 127

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1 MTDQYMRTG 9
         M +QYMRTG
Sbjct: 1 MREQYMRTG 9
>XP_005247286
          Length = 170

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M +QYMRTG
Sbjct: 77 MREQYMRTG 85
>XP_005247285
          Length = 208

 Score = 19.6 bits (39), Expect =   509
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1  MTDQYMRTG 9
          M +QYMRTG
Sbjct: 77 MREQYMRTG 85
>NP_001243749
          Length = 183

 Score = 19.2 bits (38), Expect =   665
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 1  MTDQYMRTG 9
          M DQYMR G
Sbjct: 49 MRDQYMRAG 57
>NP_001243750
          Length = 236

 Score = 19.2 bits (38), Expect =   665
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 1   MTDQYMRTG 9
           M DQYMR G
Sbjct: 102 MRDQYMRAG 110
>NP_008843
          Length = 219

 Score = 19.2 bits (38), Expect =   665
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 1  MTDQYMRTG 9
          M DQYMR G
Sbjct: 85 MRDQYMRAG 93
>NP_006261
          Length = 218

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   MTDQYMRTG 9
           M +QYMR G
Sbjct: 93  MREQYMRAG 101
>NP_055568
          Length = 1282

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   MTDQYM 6
           MTDQYM
Sbjct: 473 MTDQYM 478
>XP_005271906
          Length = 879

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   MTDQYM 6
           MTDQYM
Sbjct: 473 MTDQYM 478
>XP_006718144
          Length = 886

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   MTDQYM 6
           MTDQYM
Sbjct: 473 MTDQYM 478
>XP_005271905
          Length = 1219

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   MTDQYM 6
           MTDQYM
Sbjct: 473 MTDQYM 478
>XP_005271904
          Length = 1219

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   MTDQYM 6
           MTDQYM
Sbjct: 410 MTDQYM 415
>XP_005271903
          Length = 1282

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   MTDQYM 6
           MTDQYM
Sbjct: 473 MTDQYM 478
>NP_689967
          Length = 777

 Score = 16.9 bits (32), Expect =  3301
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   MTDQYMRTG 9
           MTD+Y+ +G
Sbjct: 195 MTDEYLYSG 203
>NP_006176
          Length = 2115

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    MTDQYMRTG 9
            +TD+ M+TG
Sbjct: 1951 ITDEEMKTG 1959
>NP_001273490
          Length = 2101

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    MTDQYMRTG 9
            +TD+ M+TG
Sbjct: 1937 ITDEEMKTG 1945
>XP_006718633
          Length = 2101

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    MTDQYMRTG 9
            +TD+ M+TG
Sbjct: 1937 ITDEEMKTG 1945
>XP_006718632
          Length = 2115

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    MTDQYMRTG 9
            +TD+ M+TG
Sbjct: 1951 ITDEEMKTG 1959
>XP_006718631
          Length = 2115

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    MTDQYMRTG 9
            +TD+ M+TG
Sbjct: 1951 ITDEEMKTG 1959
>XP_006718630
          Length = 2115

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    MTDQYMRTG 9
            +TD+ M+TG
Sbjct: 1951 ITDEEMKTG 1959
>XP_006718629
          Length = 2115

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    MTDQYMRTG 9
            +TD+ M+TG
Sbjct: 1951 ITDEEMKTG 1959
>XP_006718628
          Length = 2115

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    MTDQYMRTG 9
            +TD+ M+TG
Sbjct: 1951 ITDEEMKTG 1959
>XP_006718627
          Length = 2115

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    MTDQYMRTG 9
            +TD+ M+TG
Sbjct: 1951 ITDEEMKTG 1959
>XP_006718626
          Length = 2115

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    MTDQYMRTG 9
            +TD+ M+TG
Sbjct: 1951 ITDEEMKTG 1959
>XP_006718625
          Length = 2115

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    MTDQYMRTG 9
            +TD+ M+TG
Sbjct: 1951 ITDEEMKTG 1959
>NP_001243624
          Length = 1177

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 1   MTDQYMRTG 9
           + DQYM  G
Sbjct: 623 VVDQYMNEG 631
>NP_002832
          Length = 1445

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 5/7 (71%)

Query: 3  DQYMRTG 9
          DQY R G
Sbjct: 90 DQYARVG 96
>NP_001034680
          Length = 2554

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 4    QYMRTG 9
            QYMR G
Sbjct: 1476 QYMRNG 1481
>NP_000290
          Length = 747

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2  TDQYMRTG 9
          +DQ M+TG
Sbjct: 27 SDQKMKTG 34
>NP_001034679
          Length = 2570

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 4    QYMRTG 9
            QYMR G
Sbjct: 1476 QYMRNG 1481
>NP_001005337
          Length = 726

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2  TDQYMRTG 9
          +DQ M+TG
Sbjct: 27 SDQKMKTG 34
>XP_005272733
          Length = 2559

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 4    QYMRTG 9
            QYMR G
Sbjct: 1481 QYMRNG 1486
>XP_005272732
          Length = 2575

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 5/6 (83%)

Query: 4    QYMRTG 9
            QYMR G
Sbjct: 1481 QYMRNG 1486
>XP_005265410
          Length = 1416

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 5/7 (71%)

Query: 3  DQYMRTG 9
          DQY R G
Sbjct: 90 DQYARVG 96
>XP_005265409
          Length = 1431

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 5/7 (71%)

Query: 3  DQYMRTG 9
          DQY R G
Sbjct: 76 DQYARVG 82
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.323    0.129    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 494,867
Number of extensions: 689
Number of successful extensions: 53
Number of sequences better than 10000.0: 53
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 53
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.0 bits)
S2: 28 (15.4 bits)

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