Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 19 665 NP_671714 19 665 XP_006715890 19 665 XP_005250160 19 665 XP_005250159 19 665 NP_001186217 17 2528 NP_001186216 17 2528 NP_001186215 17 2528 NP_001186214 17 2528 NP_001008489 17 2528 NP_758442 17 3301 XP_005252703 17 3301 XP_005252702 17 3301 NP_036575 17 3301 NP_001240784 17 3301 NP_001276089 17 4312 NP_005922 17 4312 NP_055907 17 4312 XP_006726158 17 4312 XP_006726065 17 4312 XP_005255242 17 4312 XP_005255241 17 4312 XP_005255240 17 4312 XP_005255239 17 4312 NP_000238 16 5631 NP_001165132 16 5631 NP_001123291 16 5631 NP_015565 16 5631 NP_001165131 16 5631 NP_000389 16 5631 NP_078796 16 7355 NP_001276081 16 7355 NP_001170990 16 7355 NP_001276082 16 7355 XP_005271964 16 7355 XP_006714621 16 7355 NP_078850 16 7355 NP_689761 16 7355 NP_060579 15 9605 NP_056094 15 9605 XP_006719364 15 9605 XP_006719363 15 9605>NP_005742 Length = 3907 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQ IETMQ Sbjct: 674 MSQKIETMQ 682>NP_671714 Length = 3899 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQ IETMQ Sbjct: 674 MSQKIETMQ 682>XP_006715890 Length = 3860 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQ IETMQ Sbjct: 674 MSQKIETMQ 682>XP_005250160 Length = 3939 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQ IETMQ Sbjct: 674 MSQKIETMQ 682>XP_005250159 Length = 3952 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQ IETMQ Sbjct: 674 MSQKIETMQ 682>NP_001186217 Length = 241 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQN+E M+ Sbjct: 211 MSQNLEPME 219>NP_001186216 Length = 241 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQN+E M+ Sbjct: 211 MSQNLEPME 219>NP_001186215 Length = 241 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQN+E M+ Sbjct: 211 MSQNLEPME 219>NP_001186214 Length = 241 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQN+E M+ Sbjct: 211 MSQNLEPME 219>NP_001008489 Length = 241 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQN+E M+ Sbjct: 211 MSQNLEPME 219>NP_758442 Length = 458 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QNIETMQ 9 QNIET+Q Sbjct: 32 QNIETLQ 38>XP_005252703 Length = 451 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QNIETMQ 9 QNIET+Q Sbjct: 32 QNIETLQ 38>XP_005252702 Length = 506 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QNIETMQ 9 QNIET+Q Sbjct: 32 QNIETLQ 38>NP_036575 Length = 509 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QNIETMQ 9 QNIET+Q Sbjct: 32 QNIETLQ 38>NP_001240784 Length = 484 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QNIETMQ 9 QNIET+Q Sbjct: 10 QNIETLQ 16>NP_001276089 Length = 351 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 +SQN+ET + Sbjct: 109 LSQNLETQE 117>NP_005922 Length = 383 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 +SQN+ET + Sbjct: 141 LSQNLETQE 149>NP_055907 Length = 3661 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MSQNIET 7 M+QNIET Sbjct: 2375 MTQNIET 2381>XP_006726158 Length = 351 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 +SQN+ET + Sbjct: 109 LSQNLETQE 117>XP_006726065 Length = 351 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 +SQN+ET + Sbjct: 109 LSQNLETQE 117>XP_005255242 Length = 3609 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MSQNIET 7 M+QNIET Sbjct: 2323 MTQNIET 2329>XP_005255241 Length = 3637 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MSQNIET 7 M+QNIET Sbjct: 2351 MTQNIET 2357>XP_005255240 Length = 3663 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MSQNIET 7 M+QNIET Sbjct: 2377 MTQNIET 2383>XP_005255239 Length = 3689 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MSQNIET 7 M+QNIET Sbjct: 2403 MTQNIET 2409>NP_000238 Length = 383 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 +SQN+ET + Sbjct: 141 LSQNLETKE 149>NP_001165132 Length = 278 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQ +E+MQ Sbjct: 104 MSQYLESMQ 112>NP_001123291 Length = 278 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQ +E+MQ Sbjct: 104 MSQYLESMQ 112>NP_015565 Length = 278 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQ +E+MQ Sbjct: 104 MSQYLESMQ 112>NP_001165131 Length = 334 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQ +E+MQ Sbjct: 160 MSQYLESMQ 168>NP_000389 Length = 301 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 MSQ +E+MQ Sbjct: 127 MSQYLESMQ 135>NP_078796 Length = 291 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SQNIETMQ 9 +QN+ET Q Sbjct: 252 NQNVETKQ 259>NP_001276081 Length = 235 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MSQNIET 7 +SQN+ET Sbjct: 44 LSQNLET 50>NP_001170990 Length = 332 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MSQNIET 7 +SQN+ET Sbjct: 141 LSQNLET 147>NP_001276082 Length = 235 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MSQNIET 7 +SQN+ET Sbjct: 44 LSQNLET 50>XP_005271964 Length = 232 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 +SQNIE ++ Sbjct: 174 LSQNIEILE 182>XP_006714621 Length = 368 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 +SQNIE ++ Sbjct: 90 LSQNIEILE 98>NP_078850 Length = 568 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 +SQN+E +Q Sbjct: 397 LSQNVEGIQ 405>NP_689761 Length = 452 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSQNIETMQ 9 +SQNIE ++ Sbjct: 174 LSQNIEILE 182>NP_060579 Length = 582 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SQNIETMQ 9 SQN ET++ Sbjct: 431 SQNTETLE 438>NP_056094 Length = 761 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 MSQNIETMQ 9 +SQ+++T+Q Sbjct: 238 LSQHLDTLQ 246>XP_006719364 Length = 924 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 MSQNIETMQ 9 +SQ+++T+Q Sbjct: 401 LSQHLDTLQ 409>XP_006719363 Length = 944 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 MSQNIETMQ 9 +SQ+++T+Q Sbjct: 401 LSQHLDTLQ 409Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.305 0.108 0.249 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 350,611 Number of extensions: 494 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |