Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001185951 17 3301 NP_055526 17 3301 XP_006721168 17 3301 XP_005255778 17 3301 XP_005255776 17 3301 NP_002542 17 4312 NP_056372 17 4312 NP_036505 17 4312 NP_001166246 16 7355 NP_113614 16 7355 NP_690004 16 7355 NP_001172025 16 7355 NP_001172024 16 7355 NP_940931 16 7355 XP_006721943 16 7355 XP_006721942 16 7355 NP_005742 15 9605 NP_671714 15 9605 NP_079143 15 9605 NP_653323 15 9605 XP_005268211 15 9605 XP_006715890 15 9605 XP_005250160 15 9605 XP_005250159 15 9605 XP_005248435 15 9605 XP_006714564 15 9605 XP_006714563 15 9605 XP_005248434 15 9605 XP_005248433 15 9605 NP_001092872 15 9605>NP_001185951 Length = 1012 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 MSLQ +MK+ Sbjct: 226 MSLQNLMKK 234>NP_055526 Length = 991 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 MSLQ +MK+ Sbjct: 226 MSLQNLMKK 234>XP_006721168 Length = 971 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 MSLQ +MK+ Sbjct: 226 MSLQNLMKK 234>XP_005255778 Length = 991 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 MSLQ +MK+ Sbjct: 226 MSLQNLMKK 234>XP_005255776 Length = 1012 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 MSLQ +MK+ Sbjct: 226 MSLQNLMKK 234>NP_002542 Length = 321 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MSLQKMMK 8 MSLQK+M+ Sbjct: 1 MSLQKLME 8>NP_056372 Length = 1954 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 M LQKM+K+ Sbjct: 1027 MLLQKMLKK 1035>NP_036505 Length = 321 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MSLQKMMK 8 MSLQK+M+ Sbjct: 1 MSLQKLME 8>NP_001166246 Length = 627 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 +SLQK M+R Sbjct: 492 ISLQKHMRR 500>NP_113614 Length = 150 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 MSLQKMMKR 9 MSL++MM++ Sbjct: 70 MSLKRMMEK 78>NP_690004 Length = 628 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 +SLQK M+R Sbjct: 493 ISLQKHMRR 501>NP_001172025 Length = 102 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 MSLQKMMKR 9 MSL++MM++ Sbjct: 70 MSLKRMMEK 78>NP_001172024 Length = 176 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 MSLQKMMKR 9 MSL++MM++ Sbjct: 96 MSLKRMMEK 104>NP_940931 Length = 1503 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 LQKMMK 8 LQKMMK Sbjct: 1284 LQKMMK 1289>XP_006721943 Length = 1456 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 LQKMMK 8 LQKMMK Sbjct: 1284 LQKMMK 1289>XP_006721942 Length = 1503 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 LQKMMK 8 LQKMMK Sbjct: 1284 LQKMMK 1289>NP_005742 Length = 3907 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 ++LQK +KR Sbjct: 3660 LTLQKSLKR 3668>NP_671714 Length = 3899 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 ++LQK +KR Sbjct: 3652 LTLQKSLKR 3660>NP_079143 Length = 1822 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 MSLQKMMKR 9 + QKMMK+ Sbjct: 229 LEAQKMMKK 237>NP_653323 Length = 514 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 MSLQKMMKR 9 + QKMMK+ Sbjct: 229 LEAQKMMKK 237>XP_005268211 Length = 580 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SLQKMMK 8 SLQ MMK Sbjct: 446 SLQSMMK 452>XP_006715890 Length = 3860 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 ++LQK +KR Sbjct: 3613 LTLQKSLKR 3621>XP_005250160 Length = 3939 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 ++LQK +KR Sbjct: 3692 LTLQKSLKR 3700>XP_005250159 Length = 3952 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSLQKMMKR 9 ++LQK +KR Sbjct: 3705 LTLQKSLKR 3713>XP_005248435 Length = 972 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 MSLQKMMKR 9 + QKMMK+ Sbjct: 229 LEAQKMMKK 237>XP_006714564 Length = 1537 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 MSLQKMMKR 9 + QKMMK+ Sbjct: 229 LEAQKMMKK 237>XP_006714563 Length = 1766 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 MSLQKMMKR 9 + QKMMK+ Sbjct: 172 LEAQKMMKK 180>XP_005248434 Length = 1818 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 MSLQKMMKR 9 + QKMMK+ Sbjct: 229 LEAQKMMKK 237>XP_005248433 Length = 1823 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 MSLQKMMKR 9 + QKMMK+ Sbjct: 229 LEAQKMMKK 237>NP_001092872 Length = 580 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SLQKMMK 8 SLQ MMK Sbjct: 446 SLQSMMK 452Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.123 0.293 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 303,085 Number of extensions: 454 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |