Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000312 18 1135 NP_001138537 15 9605 NP_997374 15 9605 NP_001230182 15 9605 NP_112215 15 9605 NP_001273548 15 9605 NP_115665 15 9605 NP_001273547 15 9605 NP_001273546 15 9605 NP_001273549 15 9605 XP_006714864 15 9605>NP_000312 Length = 928 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MSLNSASDQ 9 M LNSASDQ Sbjct: 387 MILNSASDQ 395>NP_001138537 Length = 900 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MSLNSAS 7 MSLNSA+ Sbjct: 296 MSLNSAA 302>NP_997374 Length = 677 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MSLNSAS 7 MSLNSA+ Sbjct: 296 MSLNSAA 302>NP_001230182 Length = 521 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 MSLNSASDQ 9 + LNS+ DQ Sbjct: 336 LKLNSSEDQ 344>NP_112215 Length = 521 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 MSLNSASDQ 9 + LNS+ DQ Sbjct: 336 LKLNSSEDQ 344>NP_001273548 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SLNSASD 8 SLN ASD Sbjct: 18 SLNDASD 24>NP_115665 Length = 771 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 LNSASD 8 LNSASD Sbjct: 270 LNSASD 275>NP_001273547 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SLNSASD 8 SLN ASD Sbjct: 18 SLNDASD 24>NP_001273546 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SLNSASD 8 SLN ASD Sbjct: 18 SLNDASD 24>NP_001273549 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SLNSASD 8 SLN ASD Sbjct: 18 SLNDASD 24>XP_006714864 Length = 772 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 LNSASD 8 LNSASD Sbjct: 270 LNSASD 275Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.290 0.0985 0.221 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 336,349 Number of extensions: 449 Number of successful extensions: 11 Number of sequences better than 10000.0: 11 Number of HSP's gapped: 11 Number of HSP's successfully gapped: 11 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |