Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 20 299 NP_000170 20 299 NP_001268422 20 299 NP_001268423 20 299 XP_005264328 20 299 NP_000231 16 5631 NP_001257387 16 5631 NP_055889 16 5631 NP_000370 16 5631 NP_001095841 16 5631 NP_079231 16 5631 XP_006723318 16 5631 NP_060495 16 5631 NP_066276 16 7355 NP_001241686 16 7355 NP_001241688 16 7355 NP_001241687 16 7355 NP_006269 16 7355 NP_001265321 16 7355 NP_001193856 16 7355 XP_005271708 16 7355 XP_005271707 16 7355 XP_005271706 16 7355 XP_006718960 16 7355 XP_006718959 16 7355 XP_006715067 16 7355 NP_001137469 15 9605 NP_001137468 15 9605 NP_060715 15 9605 NP_001257391 15 9605 NP_777631 15 9605 NP_001257393 15 9605 NP_001257395 15 9605 NP_001257390 15 9605 NP_777630 15 9605 NP_777629 15 9605 NP_005052 15 9605 NP_001158508 15 9605 NP_002532 15 9605 XP_005249816 15 9605 XP_005249818 15 9605 XP_006710890 15 9605>NP_001268421 Length = 1230 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MSKYDRVVR 9 +SKYDRVVR Sbjct: 372 ISKYDRVVR 380>NP_000170 Length = 1360 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MSKYDRVVR 9 +SKYDRVVR Sbjct: 502 ISKYDRVVR 510>NP_001268422 Length = 1058 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MSKYDRVVR 9 +SKYDRVVR Sbjct: 200 ISKYDRVVR 208>NP_001268423 Length = 1058 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MSKYDRVVR 9 +SKYDRVVR Sbjct: 200 ISKYDRVVR 208>XP_005264328 Length = 1261 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MSKYDRVVR 9 +SKYDRVVR Sbjct: 403 ISKYDRVVR 411>NP_000231 Length = 527 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 M++Y RV+R Sbjct: 416 MTQYGRVIR 424>NP_001257387 Length = 394 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 M++Y RV+R Sbjct: 283 MTQYGRVIR 291>NP_055889 Length = 1770 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MSKYDRVV 8 MSKYD +V Sbjct: 1201 MSKYDLLV 1208>NP_000370 Length = 1333 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MSKYDRV 7 +SKYDR+ Sbjct: 55 LSKYDRL 61>NP_001095841 Length = 684 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 YDRVVR 9 YDRV+R Sbjct: 332 YDRVIR 337>NP_079231 Length = 684 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 YDRVVR 9 YDRV+R Sbjct: 332 YDRVIR 337>XP_006723318 Length = 622 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 +SKYD V++ Sbjct: 304 LSKYDTVLK 312>NP_060495 Length = 931 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 +SKYD V++ Sbjct: 304 LSKYDTVLK 312>NP_066276 Length = 208 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 MSKYDRVVR 9 +SKY RV R Sbjct: 183 LSKYGRVKR 191>NP_001241686 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 ++KYD V+R Sbjct: 138 INKYDVVIR 146>NP_001241688 Length = 332 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 ++KYD V+R Sbjct: 137 INKYDVVIR 145>NP_001241687 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 ++KYD V+R Sbjct: 138 INKYDVVIR 146>NP_006269 Length = 329 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 ++KYD V+R Sbjct: 134 INKYDVVIR 142>NP_001265321 Length = 374 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 +S+YDR ++ Sbjct: 195 VSRYDRTIQ 203>NP_001193856 Length = 4707 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MSKYDRV 7 +SK+DRV Sbjct: 1961 LSKFDRV 1967>XP_005271708 Length = 329 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 ++KYD V+R Sbjct: 134 INKYDVVIR 142>XP_005271707 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 ++KYD V+R Sbjct: 138 INKYDVVIR 146>XP_005271706 Length = 352 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 ++KYD V+R Sbjct: 157 INKYDVVIR 165>XP_006718960 Length = 354 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 ++KYD V+R Sbjct: 159 INKYDVVIR 167>XP_006718959 Length = 356 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MSKYDRVVR 9 ++KYD V+R Sbjct: 161 INKYDVVIR 169>XP_006715067 Length = 4707 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MSKYDRV 7 +SK+DRV Sbjct: 1961 LSKFDRV 1967>NP_001137469 Length = 801 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 MSKYDRV 7 ++KYDR+ Sbjct: 337 IAKYDRI 343>NP_001137468 Length = 953 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 MSKYDRV 7 ++KYDR+ Sbjct: 489 IAKYDRI 495>NP_060715 Length = 1010 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 MSKYDRV 7 ++KYDR+ Sbjct: 546 IAKYDRI 552>NP_001257391 Length = 230 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SKYDRV 7 SKYDR+ Sbjct: 39 SKYDRL 44>NP_777631 Length = 413 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SKYDRV 7 SKYDR+ Sbjct: 39 SKYDRL 44>NP_001257393 Length = 186 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SKYDRV 7 SKYDR+ Sbjct: 39 SKYDRL 44>NP_001257395 Length = 101 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SKYDRV 7 SKYDR+ Sbjct: 39 SKYDRL 44>NP_001257390 Length = 261 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SKYDRV 7 SKYDR+ Sbjct: 39 SKYDRL 44>NP_777630 Length = 139 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SKYDRV 7 SKYDR+ Sbjct: 39 SKYDRL 44>NP_777629 Length = 359 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SKYDRV 7 SKYDR+ Sbjct: 39 SKYDRL 44>NP_005052 Length = 407 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 MSKYDRVVR 9 M KY +V+R Sbjct: 153 MKKYCKVIR 161>NP_001158508 Length = 1019 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 MSKYDRV 7 +SKYD++ Sbjct: 555 ISKYDKI 561>NP_002532 Length = 1023 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 MSKYDRV 7 +SKYD++ Sbjct: 559 ISKYDKI 565>XP_005249816 Length = 1038 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 MSKYDRV 7 +SKYD++ Sbjct: 574 ISKYDKI 580>XP_005249818 Length = 1034 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 MSKYDRV 7 +SKYD++ Sbjct: 570 ISKYDKI 576>XP_006710890 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SKYDRV 7 SKYDR+ Sbjct: 39 SKYDRL 44Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.136 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 436,028 Number of extensions: 685 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |