Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 19 665 NP_001087241 19 665 XP_005265799 19 665 XP_005265798 19 665 XP_005265797 19 665 NP_001275896 18 1935 NP_001275894 18 1935 NP_077817 18 1935 NP_001275893 18 1935 XP_005247863 18 1935 NP_001011544 17 4312 NP_005357 17 4312 NP_001258681 17 4312 NP_005859 16 5631 NP_056054 16 7355 NP_057646 16 7355 XP_005251905 16 7355 XP_005251904 16 7355 NP_071745 16 7355 NP_001123612 16 7355 NP_573403 15 9605 NP_036604 15 9605 NP_055085 15 9605 NP_001229965 15 9605 NP_001119807 15 9605 NP_877496 15 9605 XP_005260559 15 9605 XP_005260558 15 9605 XP_006723918 15 9605 XP_005260557 15 9605 XP_005260556 15 9605 XP_005260555 15 9605 XP_005260554 15 9605 XP_006723917 15 9605 XP_005260553 15 9605 XP_006723055 15 9605 XP_005258525 15 9605 XP_006716601 15 9605>NP_000213 Length = 976 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MSKLKVLSY 9 MS+LKVLSY Sbjct: 638 MSELKVLSY 646>NP_001087241 Length = 972 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MSKLKVLSY 9 MS+LKVLSY Sbjct: 634 MSELKVLSY 642>XP_005265799 Length = 973 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MSKLKVLSY 9 MS+LKVLSY Sbjct: 635 MSELKVLSY 643>XP_005265798 Length = 976 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MSKLKVLSY 9 MS+LKVLSY Sbjct: 639 MSELKVLSY 647>XP_005265797 Length = 977 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MSKLKVLSY 9 MS+LKVLSY Sbjct: 639 MSELKVLSY 647>NP_001275896 Length = 445 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 MSKLKVLSY 9 + KLKVLSY Sbjct: 437 VKKLKVLSY 445>NP_001275894 Length = 577 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 MSKLKVLSY 9 + KLKVLSY Sbjct: 569 VKKLKVLSY 577>NP_077817 Length = 597 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 MSKLKVLSY 9 + KLKVLSY Sbjct: 589 VKKLKVLSY 597>NP_001275893 Length = 579 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 MSKLKVLSY 9 + KLKVLSY Sbjct: 571 VKKLKVLSY 579>XP_005247863 Length = 597 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 MSKLKVLSY 9 + KLKVLSY Sbjct: 589 VKKLKVLSY 597>NP_001011544 Length = 400 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SK+KVL Y Sbjct: 366 SKMKVLEY 373>NP_005357 Length = 429 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SK+KVL Y Sbjct: 395 SKMKVLEY 402>NP_001258681 Length = 275 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SK+KVL Y Sbjct: 213 SKMKVLEY 220>NP_005859 Length = 118 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MSKLKVLS 8 M KLK+LS Sbjct: 82 MGKLKILS 89>NP_056054 Length = 1186 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MSKLKVL 7 MSKLKV+ Sbjct: 1 MSKLKVI 7>NP_057646 Length = 1049 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MSKLKVLS 8 ++KLKVLS Sbjct: 203 LTKLKVLS 210>XP_005251905 Length = 1226 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MSKLKVL 7 MSKLKV+ Sbjct: 1 MSKLKVI 7>XP_005251904 Length = 1226 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 MSKLKVL 7 MSKLKV+ Sbjct: 1 MSKLKVI 7>NP_071745 Length = 960 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 KLKVLSY 9 +LKVLSY Sbjct: 136 ELKVLSY 142>NP_001123612 Length = 960 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 KLKVLSY 9 +LKVLSY Sbjct: 136 ELKVLSY 142>NP_573403 Length = 720 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SKL+ LSY Sbjct: 497 SKLRSLSY 504>NP_036604 Length = 466 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 MSKLKVLSY 9 +SKLK L Y Sbjct: 62 VSKLKKLEY 70>NP_055085 Length = 487 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LKVLSY 9 LKVLSY Sbjct: 338 LKVLSY 343>NP_001229965 Length = 487 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LKVLSY 9 LKVLSY Sbjct: 338 LKVLSY 343>NP_001119807 Length = 487 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LKVLSY 9 LKVLSY Sbjct: 338 LKVLSY 343>NP_877496 Length = 720 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SKL+ LSY Sbjct: 497 SKLRSLSY 504>XP_005260559 Length = 537 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SKL+ LSY Sbjct: 314 SKLRSLSY 321>XP_005260558 Length = 537 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SKL+ LSY Sbjct: 314 SKLRSLSY 321>XP_006723918 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SKL+ LSY Sbjct: 409 SKLRSLSY 416>XP_005260557 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SKL+ LSY Sbjct: 409 SKLRSLSY 416>XP_005260556 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SKL+ LSY Sbjct: 409 SKLRSLSY 416>XP_005260555 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SKL+ LSY Sbjct: 409 SKLRSLSY 416>XP_005260554 Length = 632 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SKL+ LSY Sbjct: 409 SKLRSLSY 416>XP_006723917 Length = 720 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SKL+ LSY Sbjct: 497 SKLRSLSY 504>XP_005260553 Length = 720 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SKLKVLSY 9 SKL+ LSY Sbjct: 497 SKLRSLSY 504>XP_006723055 Length = 260 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LKVLSY 9 LKVLSY Sbjct: 111 LKVLSY 116>XP_005258525 Length = 278 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LKVLSY 9 LKVLSY Sbjct: 129 LKVLSY 134>XP_006716601 Length = 469 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 MSKLKVLSY 9 +SKLK L Y Sbjct: 65 VSKLKKLEY 73Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.319 0.127 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 339,030 Number of extensions: 540 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |