Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 20 390 NP_005913 20 390 XP_005267046 20 390 XP_005267045 20 390 NP_055723 16 5631 NP_068761 16 5631 NP_951008 16 5631 NP_777576 16 7355 NP_005391 15 9605 NP_001229342 15 9605 NP_000563 15 9605 NP_004806 15 9605 NP_612210 15 9605 NP_963917 15 9605 NP_001193939 15 9605 NP_006248 15 9605 NP_001269574 15 9605 NP_001269573 15 9605 NP_002949 15 9605 NP_001073918 15 9605 XP_006719100 15 9605 XP_006719099 15 9605 XP_006719098 15 9605 XP_006719097 15 9605 XP_005253381 15 9605 XP_006719096 15 9605 XP_006717743 15 9605 XP_005252554 15 9605 XP_006717528 15 9605 XP_005252553 15 9605 XP_006712113 15 9605 XP_006712112 15 9605 XP_005264486 15 9605 XP_005264485 15 9605 XP_006711111 15 9605 NP_001005861 15 9605>NP_006715 Length = 1558 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MQVDNILLV 9 MQVDN+LLV Sbjct: 940 MQVDNLLLV 948>NP_005913 Length = 1608 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MQVDNILLV 9 MQVDN+LLV Sbjct: 940 MQVDNLLLV 948>XP_005267046 Length = 1554 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MQVDNILLV 9 MQVDN+LLV Sbjct: 940 MQVDNLLLV 948>XP_005267045 Length = 1604 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MQVDNILLV 9 MQVDN+LLV Sbjct: 940 MQVDNLLLV 948>NP_055723 Length = 538 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QVDNILL 8 Q+DN+LL Sbjct: 522 QIDNLLL 528>NP_068761 Length = 1133 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QVDNILL 8 QVDN++L Sbjct: 947 QVDNVIL 953>NP_951008 Length = 1086 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QVDNILL 8 QVDN++L Sbjct: 947 QVDNVIL 953>NP_777576 Length = 1749 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 MQVDNILLV 9 MQ+ NILL+ Sbjct: 540 MQLKNILLM 548>NP_005391 Length = 737 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DNILL Sbjct: 533 LKLDNILL 540>NP_001229342 Length = 643 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DNILL Sbjct: 505 LKLDNILL 512>NP_000563 Length = 178 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QVDNILL 8 Q+DN+LL Sbjct: 60 QLDNLLL 66>NP_004806 Length = 1261 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DN+LL Sbjct: 192 LELDNVLL 199>NP_612210 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MQVDNIL 7 M+VDNI+ Sbjct: 203 MRVDNII 209>NP_963917 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MQVDNIL 7 M+VDNI+ Sbjct: 170 MRVDNII 176>NP_001193939 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MQVDNIL 7 M+VDNI+ Sbjct: 213 MRVDNII 219>NP_006248 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DNILL Sbjct: 505 LKLDNILL 512>NP_001269574 Length = 581 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DNILL Sbjct: 380 LKLDNILL 387>NP_001269573 Length = 670 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DNILL Sbjct: 469 LKLDNILL 476>NP_002949 Length = 607 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 QVDNIL 7 QVDN+L Sbjct: 126 QVDNVL 131>NP_001073918 Length = 1060 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VDNILL 8 VDNILL Sbjct: 682 VDNILL 687>XP_006719100 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MQVDNIL 7 M+VDNI+ Sbjct: 203 MRVDNII 209>XP_006719099 Length = 230 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MQVDNIL 7 M+VDNI+ Sbjct: 220 MRVDNII 226>XP_006719098 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MQVDNIL 7 M+VDNI+ Sbjct: 220 MRVDNII 226>XP_006719097 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MQVDNIL 7 M+VDNI+ Sbjct: 203 MRVDNII 209>XP_005253381 Length = 265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MQVDNIL 7 M+VDNI+ Sbjct: 203 MRVDNII 209>XP_006719096 Length = 282 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MQVDNIL 7 M+VDNI+ Sbjct: 220 MRVDNII 226>XP_006717743 Length = 1090 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 VDNILL 8 VDNILL Sbjct: 712 VDNILL 717>XP_005252554 Length = 697 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DNILL Sbjct: 539 LKLDNILL 546>XP_006717528 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DNILL Sbjct: 505 LKLDNILL 512>XP_005252553 Length = 740 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DNILL Sbjct: 539 LKLDNILL 546>XP_006712113 Length = 460 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DNILL Sbjct: 256 LKLDNILL 263>XP_006712112 Length = 587 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DNILL Sbjct: 383 LKLDNILL 390>XP_005264486 Length = 600 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DNILL Sbjct: 396 LKLDNILL 403>XP_005264485 Length = 737 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DNILL Sbjct: 533 LKLDNILL 540>XP_006711111 Length = 1197 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MQVDNILL 8 +++DN+LL Sbjct: 128 LELDNVLL 135>NP_001005861 Length = 610 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 QVDNIL 7 QVDN+L Sbjct: 126 QVDNVL 131Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.149 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 394,663 Number of extensions: 522 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |