Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001243398 20 390 NP_036462 20 390 NP_001243397 20 390 XP_005269721 20 390 NP_002218 17 3301 XP_005270898 17 3301 XP_006710687 17 3301 NP_001138537 17 4312 NP_997374 17 4312 NP_065853 16 5631 XP_005271684 16 5631 NP_000432 16 7355 XP_005250483 16 7355 XP_006716087 16 7355 XP_005250482 16 7355 NP_003611 15 9605 NP_060952 15 9605 NP_705900 15 9605 NP_055242 15 9605 NP_001073996 15 9605 NP_001234925 15 9605 XP_006716630 15 9605 XP_006716629 15 9605 XP_006716628 15 9605 XP_006716627 15 9605 XP_006716626 15 9605 XP_005250982 15 9605 XP_006712602 15 9605 NP_055248 15 9605 NP_665805 15 9605>NP_001243398 Length = 1781 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MQLAEIPKT 9 MQLAEIP+T Sbjct: 1487 MQLAEIPET 1495>NP_036462 Length = 2073 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MQLAEIPKT 9 MQLAEIP+T Sbjct: 1779 MQLAEIPET 1787>NP_001243397 Length = 1890 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MQLAEIPKT 9 MQLAEIP+T Sbjct: 1596 MQLAEIPET 1604>XP_005269721 Length = 2073 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MQLAEIPKT 9 MQLAEIP+T Sbjct: 1779 MQLAEIPET 1787>NP_002218 Length = 1154 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MQLAEIPK 8 MQL E+PK Sbjct: 206 MQLPELPK 213>XP_005270898 Length = 1154 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MQLAEIPK 8 MQL E+PK Sbjct: 206 MQLPELPK 213>XP_006710687 Length = 1154 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MQLAEIPK 8 MQL E+PK Sbjct: 206 MQLPELPK 213>NP_001138537 Length = 900 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MQLAEIPKT 9 +Q+AE+P T Sbjct: 350 LQIAELPAT 358>NP_997374 Length = 677 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MQLAEIPKT 9 +Q+AE+P T Sbjct: 350 LQIAELPAT 358>NP_065853 Length = 1117 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AEIPKT 9 AEIPKT Sbjct: 621 AEIPKT 626>XP_005271684 Length = 1081 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AEIPKT 9 AEIPKT Sbjct: 621 AEIPKT 626>NP_000432 Length = 780 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 MQLAEIPK 8 MQL +IP+ Sbjct: 463 MQLCDIPR 470>XP_005250483 Length = 367 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 MQLAEIPK 8 MQL +IP+ Sbjct: 50 MQLCDIPR 57>XP_006716087 Length = 780 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 MQLAEIPK 8 MQL +IP+ Sbjct: 463 MQLCDIPR 470>XP_005250482 Length = 780 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 MQLAEIPK 8 MQL +IP+ Sbjct: 463 MQLCDIPR 470>NP_003611 Length = 605 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QLAEIPKT 9 +LAE PKT Sbjct: 156 KLAEWPKT 163>NP_060952 Length = 1129 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QLAEIPK 8 QLAE+P+ Sbjct: 926 QLAELPQ 932>NP_705900 Length = 558 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LAEIPK 8 LAE+PK Sbjct: 524 LAEVPK 529>NP_055242 Length = 633 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LAEIPK 8 LAE+PK Sbjct: 599 LAEVPK 604>NP_001073996 Length = 2116 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 QLAEIPK 8 QLA +PK Sbjct: 1949 QLASVPK 1955>NP_001234925 Length = 1122 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QLAEIPK 8 QLAE+P+ Sbjct: 919 QLAELPQ 925>XP_006716630 Length = 1073 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QLAEIPK 8 QLAE+P+ Sbjct: 870 QLAELPQ 876>XP_006716629 Length = 1075 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QLAEIPK 8 QLAE+P+ Sbjct: 872 QLAELPQ 878>XP_006716628 Length = 1076 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QLAEIPK 8 QLAE+P+ Sbjct: 873 QLAELPQ 879>XP_006716627 Length = 1125 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QLAEIPK 8 QLAE+P+ Sbjct: 922 QLAELPQ 928>XP_006716626 Length = 1132 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QLAEIPK 8 QLAE+P+ Sbjct: 929 QLAELPQ 935>XP_005250982 Length = 1132 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QLAEIPK 8 QLAE+P+ Sbjct: 929 QLAELPQ 935>XP_006712602 Length = 2142 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 QLAEIPK 8 QLA +PK Sbjct: 1975 QLASVPK 1981>NP_055248 Length = 348 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 MQLAEIPK 8 MQL ++P+ Sbjct: 133 MQLVQVPR 140>NP_665805 Length = 252 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 MQLAEIPK 8 MQ+A++P+ Sbjct: 66 MQVADVPE 73Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.125 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 660,017 Number of extensions: 739 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |