Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 20 299 NP_671714 20 299 XP_006715890 20 299 XP_005250160 20 299 XP_005250159 20 299 NP_065813 17 3301 XP_005269099 17 3301 XP_005250110 16 5631 XP_005250109 16 5631 NP_003452 16 5631 NP_001010972 16 5631 NP_001177766 15 9605 NP_001128512 15 9605 NP_004073 15 9605 NP_075408 15 9605 NP_001128513 15 9605 NP_001177765 15 9605 NP_001316 15 9605 NP_085132 15 9605 NP_938204 15 9605 XP_006724685 15 9605 XP_006721348 15 9605 XP_005256239 15 9605 XP_005256238 15 9605 XP_005256236 15 9605>NP_005742 Length = 3907 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MNVAMNELN 9 MNVA+NELN Sbjct: 491 MNVAINELN 499>NP_671714 Length = 3899 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MNVAMNELN 9 MNVA+NELN Sbjct: 491 MNVAINELN 499>XP_006715890 Length = 3860 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MNVAMNELN 9 MNVA+NELN Sbjct: 491 MNVAINELN 499>XP_005250160 Length = 3939 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MNVAMNELN 9 MNVA+NELN Sbjct: 491 MNVAINELN 499>XP_005250159 Length = 3952 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MNVAMNELN 9 MNVA+NELN Sbjct: 491 MNVAINELN 499>NP_065813 Length = 1085 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MNVAMNEL 8 MN A+NEL Sbjct: 966 MNTALNEL 973>XP_005269099 Length = 1062 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MNVAMNEL 8 MN A+NEL Sbjct: 943 MNTALNEL 950>XP_005250110 Length = 631 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 NVAMNEL 8 NVA+NEL Sbjct: 436 NVAVNEL 442>XP_005250109 Length = 632 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 NVAMNEL 8 NVA+NEL Sbjct: 437 NVAVNEL 443>NP_003452 Length = 572 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 NVAMNEL 8 NVA+NEL Sbjct: 377 NVAVNEL 383>NP_001010972 Length = 572 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 NVAMNEL 8 NVA+NEL Sbjct: 377 NVAVNEL 383>NP_001177766 Length = 1271 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AMNELN 9 AMNE+N Sbjct: 459 AMNEMN 464>NP_001128512 Length = 1253 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AMNELN 9 AMNE+N Sbjct: 446 AMNEMN 451>NP_004073 Length = 1278 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AMNELN 9 AMNE+N Sbjct: 466 AMNEMN 471>NP_075408 Length = 1144 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AMNELN 9 AMNE+N Sbjct: 332 AMNEMN 337>NP_001128513 Length = 1139 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AMNELN 9 AMNE+N Sbjct: 332 AMNEMN 337>NP_001177765 Length = 1236 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AMNELN 9 AMNE+N Sbjct: 429 AMNEMN 434>NP_001316 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NVAMNELN 9 NV+MN+ N Sbjct: 218 NVSMNQQN 225>NP_085132 Length = 679 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VAMNELN 9 +A+NELN Sbjct: 198 LALNELN 204>NP_938204 Length = 773 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VAMNELN 9 +A+NELN Sbjct: 292 LALNELN 298>XP_006724685 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NVAMNELN 9 NV+MN+ N Sbjct: 58 NVSMNQQN 65>XP_006721348 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VAMNELN 9 +A+NELN Sbjct: 105 LALNELN 111>XP_005256239 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VAMNELN 9 +A+NELN Sbjct: 105 LALNELN 111>XP_005256238 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VAMNELN 9 +A+NELN Sbjct: 105 LALNELN 111>XP_005256236 Length = 737 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VAMNELN 9 +A+NELN Sbjct: 256 LALNELN 262Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.118 0.298 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 281,734 Number of extensions: 451 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |