Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000312 18 1135 XP_006725521 16 7355 XP_005276858 16 7355 XP_006714693 16 7355 NP_001138537 15 9605 NP_997374 15 9605 NP_001273548 15 9605 NP_115665 15 9605 NP_004566 15 9605 NP_001273547 15 9605 NP_001273546 15 9605 NP_001273549 15 9605 XP_006719760 15 9605 XP_006719759 15 9605 XP_006719758 15 9605 XP_005254048 15 9605 XP_006719757 15 9605 XP_006714864 15 9605 NP_997194 15 9605>NP_000312 Length = 928 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MMSLNSASD 9 MM LNSASD Sbjct: 386 MMILNSASD 394>XP_006725521 Length = 792 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 MMSLNSASD 9 MM+L+SAS+ Sbjct: 782 MMTLHSASN 790>XP_005276858 Length = 792 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 MMSLNSASD 9 MM+L+SAS+ Sbjct: 782 MMTLHSASN 790>XP_006714693 Length = 792 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 MMSLNSASD 9 MM+L+SAS+ Sbjct: 782 MMTLHSASN 790>NP_001138537 Length = 900 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MSLNSAS 8 MSLNSA+ Sbjct: 296 MSLNSAA 302>NP_997374 Length = 677 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MSLNSAS 8 MSLNSA+ Sbjct: 296 MSLNSAA 302>NP_001273548 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLNSASD 9 SLN ASD Sbjct: 18 SLNDASD 24>NP_115665 Length = 771 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LNSASD 9 LNSASD Sbjct: 270 LNSASD 275>NP_004566 Length = 409 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 MMSLNS 6 MMSLNS Sbjct: 3 MMSLNS 8>NP_001273547 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLNSASD 9 SLN ASD Sbjct: 18 SLNDASD 24>NP_001273546 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLNSASD 9 SLN ASD Sbjct: 18 SLNDASD 24>NP_001273549 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLNSASD 9 SLN ASD Sbjct: 18 SLNDASD 24>XP_006719760 Length = 504 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 MMSLNS 6 MMSLNS Sbjct: 426 MMSLNS 431>XP_006719759 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 MMSLNS 6 MMSLNS Sbjct: 499 MMSLNS 504>XP_006719758 Length = 578 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 MMSLNS 6 MMSLNS Sbjct: 547 MMSLNS 552>XP_005254048 Length = 621 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 MMSLNS 6 MMSLNS Sbjct: 543 MMSLNS 548>XP_006719757 Length = 625 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 MMSLNS 6 MMSLNS Sbjct: 547 MMSLNS 552>XP_006714864 Length = 772 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LNSASD 9 LNSASD Sbjct: 270 LNSASD 275>NP_997194 Length = 573 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 MMSLNS 6 MMSLNS Sbjct: 495 MMSLNS 500Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.299 0.103 0.235 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 267,504 Number of extensions: 316 Number of successful extensions: 19 Number of sequences better than 10000.0: 19 Number of HSP's gapped: 19 Number of HSP's successfully gapped: 19 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |