Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000305 19 665 XP_006717989 19 665 NP_116231 17 2528 XP_005250714 17 2528 XP_005250712 17 2528 NP_005325 15 9605 NP_940905 15 9605 NP_001274748 15 9605 NP_001274749 15 9605 NP_001121367 15 9605 NP_001121368 15 9605 NP_071912 15 9605 NP_066918 15 9605 XP_005274721 15 9605 XP_006724879 15 9605 XP_006724878 15 9605 XP_006712194 15 9605 XP_006712193 15 9605 XP_006712192 15 9605 XP_006712191 15 9605 XP_006711358 15 9605 XP_006711357 15 9605>NP_000305 Length = 403 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MMFETILMF 9 MMFETI MF Sbjct: 198 MMFETIPMF 206>XP_006717989 Length = 388 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MMFETILMF 9 MMFETI MF Sbjct: 183 MMFETIPMF 191>NP_116231 Length = 561 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MFETILMF 9 MF T+LMF Sbjct: 524 MFHTLLMF 531>XP_005250714 Length = 519 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MFETILMF 9 MF T+LMF Sbjct: 482 MFHTLLMF 489>XP_005250712 Length = 560 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MFETILMF 9 MF T+LMF Sbjct: 523 MFHTLLMF 530>NP_005325 Length = 2035 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MMFETILM 8 M +ETILM Sbjct: 304 MAWETILM 311>NP_940905 Length = 1135 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MFETILM 8 +FETIL+ Sbjct: 116 LFETILL 122>NP_001274748 Length = 1111 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MFETILM 8 +FETIL+ Sbjct: 116 LFETILL 122>NP_001274749 Length = 1068 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MFETILM 8 +FETIL+ Sbjct: 116 LFETILL 122>NP_001121367 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MFETILMF 9 MF +IL+F Sbjct: 13 MFSSILLF 20>NP_001121368 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MFETILMF 9 MF +IL+F Sbjct: 13 MFSSILLF 20>NP_071912 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MFETILMF 9 MF +IL+F Sbjct: 13 MFSSILLF 20>NP_066918 Length = 635 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 MFETILMF 9 +F+T++MF Sbjct: 204 VFQTLVMF 211>XP_005274721 Length = 2036 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MMFETILM 8 M +ETILM Sbjct: 304 MAWETILM 311>XP_006724879 Length = 2079 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MMFETILM 8 M +ETILM Sbjct: 304 MAWETILM 311>XP_006724878 Length = 2080 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MMFETILM 8 M +ETILM Sbjct: 304 MAWETILM 311>XP_006712194 Length = 362 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 MFETILMF 9 +F+T++MF Sbjct: 204 VFQTLVMF 211>XP_006712193 Length = 635 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 MFETILMF 9 +F+T++MF Sbjct: 204 VFQTLVMF 211>XP_006712192 Length = 635 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 MFETILMF 9 +F+T++MF Sbjct: 204 VFQTLVMF 211>XP_006712191 Length = 635 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 MFETILMF 9 +F+T++MF Sbjct: 204 VFQTLVMF 211>XP_006711358 Length = 1118 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MFETILM 8 +FETIL+ Sbjct: 116 LFETILL 122>XP_006711357 Length = 1142 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MFETILM 8 +FETIL+ Sbjct: 116 LFETILL 122Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.364 0.157 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 284,941 Number of extensions: 334 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |