Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 18 1135 XP_006718908 18 1135 XP_005271621 18 1135 XP_006718907 18 1135 XP_006718906 18 1135 XP_005271619 18 1135 XP_005271618 18 1135 NP_005920 15 9605 NP_201573 15 9605 XP_006713707 15 9605 XP_006713706 15 9605 XP_006713705 15 9605>NP_000042 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MMALRTVIL 9 +MALRTVIL Sbjct: 2223 IMALRTVIL 2231>XP_006718908 Length = 1708 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MMALRTVIL 9 +MALRTVIL Sbjct: 875 IMALRTVIL 883>XP_005271621 Length = 2708 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MMALRTVIL 9 +MALRTVIL Sbjct: 1875 IMALRTVIL 1883>XP_006718907 Length = 3050 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MMALRTVIL 9 +MALRTVIL Sbjct: 2217 IMALRTVIL 2225>XP_006718906 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MMALRTVIL 9 +MALRTVIL Sbjct: 2223 IMALRTVIL 2231>XP_005271619 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MMALRTVIL 9 +MALRTVIL Sbjct: 2223 IMALRTVIL 2231>XP_005271618 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MMALRTVIL 9 +MALRTVIL Sbjct: 2223 IMALRTVIL 2231>NP_005920 Length = 738 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MMALRTVI 8 ++ALRTV+ Sbjct: 11 LLALRTVL 18>NP_201573 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MMALRTVI 8 ++ALRTV+ Sbjct: 11 LLALRTVL 18>XP_006713707 Length = 746 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MMALRTVI 8 ++ALRTV+ Sbjct: 11 LLALRTVL 18>XP_006713706 Length = 759 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MMALRTVI 8 ++ALRTV+ Sbjct: 11 LLALRTVL 18>XP_006713705 Length = 760 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MMALRTVI 8 ++ALRTV+ Sbjct: 11 LLALRTVL 18Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.355 0.149 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 223,962 Number of extensions: 180 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |