Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000224 18 1135 NP_000360 18 1135 XP_005268094 18 1135 XP_005264366 18 1135 XP_006712078 18 1135 NP_000537 17 4312 NP_001263689 17 4312 NP_001119584 17 4312 NP_001119586 17 4312 NP_001263625 17 4312 NP_001119590 17 4312 NP_001263690 17 4312 NP_001119585 17 4312 NP_001263624 17 4312 NP_001119588 17 4312 NP_001119587 17 4312 NP_001119589 17 4312 NP_001263627 17 4312 NP_001263628 17 4312 NP_001263626 17 4312 NP_001159530 15 9605 NP_001240658 15 9605 NP_001240657 15 9605 NP_001240656 15 9605 NP_001240659 15 9605 NP_001240662 15 9605 NP_001240661 15 9605 NP_067647 15 9605 NP_570718 15 9605 XP_006726617 15 9605 XP_006720409 15 9605 XP_005263090 15 9605 XP_005263091 15 9605 XP_006710039 15 9605 NP_000901 15 9605>NP_000224 Length = 699 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LTVITLER 9 LTVITLER Sbjct: 457 LTVITLER 464>NP_000360 Length = 764 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LTVITLER 9 LTVITLER Sbjct: 512 LTVITLER 519>XP_005268094 Length = 764 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LTVITLER 9 LTVITLER Sbjct: 512 LTVITLER 519>XP_005264366 Length = 380 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LTVITLER 9 LTVITLER Sbjct: 138 LTVITLER 145>XP_006712078 Length = 389 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LTVITLER 9 LTVITLER Sbjct: 147 LTVITLER 154>NP_000537 Length = 393 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 251 ILTIITLE 258>NP_001263689 Length = 354 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 212 ILTIITLE 219>NP_001119584 Length = 393 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 251 ILTIITLE 258>NP_001119586 Length = 341 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 251 ILTIITLE 258>NP_001263625 Length = 302 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 212 ILTIITLE 219>NP_001119590 Length = 354 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 212 ILTIITLE 219>NP_001263690 Length = 354 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 212 ILTIITLE 219>NP_001119585 Length = 346 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 251 ILTIITLE 258>NP_001263624 Length = 307 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 212 ILTIITLE 219>NP_001119588 Length = 209 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 119 ILTIITLE 126>NP_001119587 Length = 261 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 119 ILTIITLE 126>NP_001119589 Length = 214 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 119 ILTIITLE 126>NP_001263627 Length = 182 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 92 ILTIITLE 99>NP_001263628 Length = 187 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 92 ILTIITLE 99>NP_001263626 Length = 234 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MLTVITLE 8 +LT+ITLE Sbjct: 92 ILTIITLE 99>NP_001159530 Length = 730 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLTVITLER 9 +LT +TLE+ Sbjct: 488 LLTYLTLEK 496>NP_001240658 Length = 709 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLTVITLER 9 +LT +TLE+ Sbjct: 454 LLTFLTLEK 462>NP_001240657 Length = 724 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLTVITLER 9 +LT +TLE+ Sbjct: 469 LLTFLTLEK 477>NP_001240656 Length = 784 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLTVITLER 9 +LT +TLE+ Sbjct: 529 LLTFLTLEK 537>NP_001240659 Length = 626 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLTVITLER 9 +LT +TLE+ Sbjct: 371 LLTFLTLEK 379>NP_001240662 Length = 601 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLTVITLER 9 +LT +TLE+ Sbjct: 346 LLTFLTLEK 354>NP_001240661 Length = 625 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLTVITLER 9 +LT +TLE+ Sbjct: 370 LLTFLTLEK 378>NP_067647 Length = 757 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLTVITLER 9 +LT +TLE+ Sbjct: 502 LLTFLTLEK 510>NP_570718 Length = 754 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLTVITLER 9 +LT +TLE+ Sbjct: 512 LLTYLTLEK 520>XP_006726617 Length = 1688 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TVITLER 9 TVI+LER Sbjct: 982 TVISLER 988>XP_006720409 Length = 1688 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TVITLER 9 TVI+LER Sbjct: 982 TVISLER 988>XP_005263090 Length = 381 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LTVITLER 9 LTVI L+R Sbjct: 141 LTVIALDR 148>XP_005263091 Length = 381 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LTVITLER 9 LTVI L+R Sbjct: 141 LTVIALDR 148>XP_006710039 Length = 1584 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TVITLER 9 TVI+LER Sbjct: 878 TVISLER 884>NP_000901 Length = 381 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LTVITLER 9 LTVI L+R Sbjct: 141 LTVIALDR 148Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.142 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 387,089 Number of extensions: 560 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |