Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 18 1482 XP_006716142 18 1482 XP_005250088 18 1482 XP_006716141 18 1482 XP_005250085 18 1482 XP_006716140 18 1482 XP_005250084 18 1482 XP_005250083 18 1482 XP_005250082 18 1482 NP_001035521 17 4312 NP_004930 16 5631 NP_001129628 16 5631 NP_001254514 16 5631 NP_001254515 16 5631 NP_001269469 16 5631 NP_060700 16 5631 NP_055725 16 5631 XP_006721485 16 5631 XP_006721484 16 5631 XP_006721483 16 5631 NP_006373 16 5631 NP_001141 16 7355 NP_065073 16 7355 XP_005254949 16 7355 XP_006715582 16 7355 NP_001123517 15 9605 NP_001139627 15 9605 NP_001139626 15 9605 NP_689657 15 9605 NP_055061 15 9605 XP_006724446 15 9605 XP_005244795 15 9605 XP_006710612 15 9605 XP_006710611 15 9605 XP_006710610 15 9605 XP_005244794 15 9605>NP_733751 Length = 4911 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 M SQERFLV Sbjct: 2492 MPSQERFLV 2500>XP_006716142 Length = 4927 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 M SQERFLV Sbjct: 2509 MPSQERFLV 2517>XP_005250088 Length = 4928 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 M SQERFLV Sbjct: 2509 MPSQERFLV 2517>XP_006716141 Length = 4959 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 M SQERFLV Sbjct: 2509 MPSQERFLV 2517>XP_005250085 Length = 4979 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 M SQERFLV Sbjct: 2509 MPSQERFLV 2517>XP_006716140 Length = 4982 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 M SQERFLV Sbjct: 2509 MPSQERFLV 2517>XP_005250084 Length = 4982 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 M SQERFLV Sbjct: 2509 MPSQERFLV 2517>XP_005250083 Length = 4982 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 M SQERFLV Sbjct: 2508 MPSQERFLV 2516>XP_005250082 Length = 4983 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 M SQERFLV Sbjct: 2509 MPSQERFLV 2517>NP_001035521 Length = 106 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LSQERFL 8 +SQERFL Sbjct: 79 ISQERFL 85>NP_004930 Length = 740 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LSQERFLV 9 LSQ RFLV Sbjct: 361 LSQVRFLV 368>NP_001129628 Length = 953 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSQERFLV 9 LSQ+RFL+ Sbjct: 409 LSQKRFLM 416>NP_001254514 Length = 1052 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSQERFLV 9 +SQ RFLV Sbjct: 51 ISQRRFLV 58>NP_001254515 Length = 999 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSQERFLV 9 +SQ RFLV Sbjct: 51 ISQRRFLV 58>NP_001269469 Length = 714 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSQERFLV 9 +SQ RFLV Sbjct: 51 ISQRRFLV 58>NP_060700 Length = 1156 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 MLSQERFLV 9 M QERFL+ Sbjct: 995 MAEQERFLL 1003>NP_055725 Length = 953 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSQERFLV 9 LSQ+RFL+ Sbjct: 409 LSQKRFLM 416>XP_006721485 Length = 805 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSQERFLV 9 +SQ RFLV Sbjct: 51 ISQRRFLV 58>XP_006721484 Length = 997 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSQERFLV 9 +SQ RFLV Sbjct: 51 ISQRRFLV 58>XP_006721483 Length = 1061 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSQERFLV 9 +SQ RFLV Sbjct: 51 ISQRRFLV 58>NP_006373 Length = 752 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSQERFLV 9 +SQ RFLV Sbjct: 51 ISQRRFLV 58>NP_001141 Length = 967 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSQERFLV 9 LSQE FL+ Sbjct: 561 LSQEHFLL 568>NP_065073 Length = 2177 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MLSQERFL 8 +LS+ERF+ Sbjct: 75 LLSEERFV 82>XP_005254949 Length = 967 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSQERFLV 9 LSQE FL+ Sbjct: 561 LSQEHFLL 568>XP_006715582 Length = 2106 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MLSQERFL 8 +LS+ERF+ Sbjct: 4 LLSEERFV 11>NP_001123517 Length = 673 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 +LSQ RF++ Sbjct: 556 LLSQRRFVL 564>NP_001139627 Length = 351 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LSQERFLV 9 +++ERFLV Sbjct: 282 ITRERFLV 289>NP_001139626 Length = 351 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LSQERFLV 9 +++ERFLV Sbjct: 282 ITRERFLV 289>NP_689657 Length = 351 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LSQERFLV 9 +++ERFLV Sbjct: 282 ITRERFLV 289>NP_055061 Length = 3014 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LSQERFL 8 +SQE+FL Sbjct: 1214 MSQEKFL 1220>XP_006724446 Length = 3019 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LSQERFL 8 +SQE+FL Sbjct: 1214 MSQEKFL 1220>XP_005244795 Length = 600 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 +LSQ RF++ Sbjct: 483 LLSQRRFVL 491>XP_006710612 Length = 646 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 +LSQ RF++ Sbjct: 529 LLSQRRFVL 537>XP_006710611 Length = 673 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 +LSQ RF++ Sbjct: 556 LLSQRRFVL 564>XP_006710610 Length = 673 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 +LSQ RF++ Sbjct: 556 LLSQRRFVL 564>XP_005244794 Length = 673 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSQERFLV 9 +LSQ RF++ Sbjct: 556 LLSQRRFVL 564Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.339 0.144 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 421,436 Number of extensions: 345 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |