Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 20 390 NP_001035957 20 390 XP_005276506 20 390 XP_006721991 20 390 XP_006721990 20 390 XP_006721989 20 390 XP_005258041 20 390 XP_006721988 20 390 XP_006721987 20 390 XP_006721986 20 390 XP_005258040 20 390 XP_006721985 20 390 XP_006720412 20 390 NP_055935 17 4312 NP_060833 17 4312 NP_001026879 17 4312 NP_001135920 17 4312 NP_001135921 17 4312 XP_006721159 17 4312 XP_005255675 17 4312 XP_005270007 17 4312 XP_005270006 17 4312 XP_005270005 17 4312 XP_005270004 17 4312 XP_005270003 17 4312 NP_001135923 17 4312 NP_114427 17 4312 NP_001135922 17 4312 NP_001118230 16 5631 XP_006721512 16 5631 XP_006721511 16 5631 NP_001004684 16 5631 NP_001230925 16 7355 NP_001027 16 7355 NP_001139189 15 9605 NP_001167539 15 9605 NP_001123368 15 9605 NP_542775 15 9605 NP_001027025 15 9605 XP_005262286 15 9605 XP_006724781 15 9605 XP_006724780 15 9605 XP_005262283 15 9605>NP_000258 Length = 2818 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 1569 LSIFYQAG 1576>NP_001035957 Length = 2839 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 1590 LSIFYQAG 1597>XP_005276506 Length = 151 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 114 LSIFYQAG 121>XP_006721991 Length = 1632 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 1600 LSIFYQAG 1607>XP_006721990 Length = 2823 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 1600 LSIFYQAG 1607>XP_006721989 Length = 2823 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 1600 LSIFYQAG 1607>XP_005258041 Length = 2836 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 1569 LSIFYQAG 1576>XP_006721988 Length = 2846 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 1579 LSIFYQAG 1586>XP_006721987 Length = 2849 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 1600 LSIFYQAG 1607>XP_006721986 Length = 2854 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 1587 LSIFYQAG 1594>XP_005258040 Length = 2857 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 1590 LSIFYQAG 1597>XP_006721985 Length = 2867 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 1600 LSIFYQAG 1607>XP_006720412 Length = 128 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LSIFYQAG 9 LSIFYQAG Sbjct: 91 LSIFYQAG 98>NP_055935 Length = 4169 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SIFYQAG 9 SIFYQ G Sbjct: 583 SIFYQQG 589>NP_060833 Length = 315 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSIFYQAG 9 L +FY+AG Sbjct: 196 LGLFYEAG 203>NP_001026879 Length = 342 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSIFYQAG 9 L +FY+AG Sbjct: 196 LGLFYEAG 203>NP_001135920 Length = 528 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 MLSIFYQA 8 MLSIFY A Sbjct: 187 MLSIFYFA 194>NP_001135921 Length = 454 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 MLSIFYQA 8 MLSIFY A Sbjct: 165 MLSIFYFA 172>XP_006721159 Length = 521 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 MLSIFYQA 8 MLSIFY A Sbjct: 232 MLSIFYFA 239>XP_005255675 Length = 573 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 MLSIFYQA 8 MLSIFY A Sbjct: 232 MLSIFYFA 239>XP_005270007 Length = 232 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSIFYQAG 9 L +FY+AG Sbjct: 113 LGLFYEAG 120>XP_005270006 Length = 241 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSIFYQAG 9 L +FY+AG Sbjct: 196 LGLFYEAG 203>XP_005270005 Length = 259 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSIFYQAG 9 L +FY+AG Sbjct: 113 LGLFYEAG 120>XP_005270004 Length = 265 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSIFYQAG 9 L +FY+AG Sbjct: 196 LGLFYEAG 203>XP_005270003 Length = 306 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSIFYQAG 9 L +FY+AG Sbjct: 196 LGLFYEAG 203>NP_001135923 Length = 476 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 MLSIFYQA 8 MLSIFY A Sbjct: 187 MLSIFYFA 194>NP_114427 Length = 528 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 MLSIFYQA 8 MLSIFY A Sbjct: 187 MLSIFYFA 194>NP_001135922 Length = 455 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 MLSIFYQA 8 MLSIFY A Sbjct: 114 MLSIFYFA 121>NP_001118230 Length = 549 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MLSIFYQA 8 MLS+FY A Sbjct: 230 MLSVFYFA 237>XP_006721512 Length = 379 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MLSIFYQA 8 MLS+FY A Sbjct: 60 MLSVFYFA 67>XP_006721511 Length = 398 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MLSIFYQA 8 MLS+FY A Sbjct: 79 MLSVFYFA 86>NP_001004684 Length = 330 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 MLSIFYQA 8 M+S+FY A Sbjct: 289 MISVFYTA 296>NP_001230925 Length = 4865 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 IFYQAG 9 IFY+AG Sbjct: 249 IFYEAG 254>NP_001027 Length = 4870 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 IFYQAG 9 IFY+AG Sbjct: 249 IFYEAG 254>NP_001139189 Length = 532 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 5 FYQAG 9 FYQAG Sbjct: 26 FYQAG 30>NP_001167539 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSIFYQAG 9 M+SI+ +AG Sbjct: 341 MMSIYSEAG 349>NP_001123368 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSIFYQAG 9 M+SI+ +AG Sbjct: 341 MMSIYSEAG 349>NP_542775 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSIFYQAG 9 M+SI+ +AG Sbjct: 341 MMSIYSEAG 349>NP_001027025 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 LSIFYQA 8 +S+FYQ+ Sbjct: 142 ISVFYQS 148>XP_005262286 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSIFYQAG 9 M+SI+ +AG Sbjct: 341 MMSIYSEAG 349>XP_006724781 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSIFYQAG 9 M+SI+ +AG Sbjct: 341 MMSIYSEAG 349>XP_006724780 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSIFYQAG 9 M+SI+ +AG Sbjct: 341 MMSIYSEAG 349>XP_005262283 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 MLSIFYQAG 9 M+SI+ +AG Sbjct: 341 MMSIYSEAG 349Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.337 0.145 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 404,184 Number of extensions: 555 Number of successful extensions: 43 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 43 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |