Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 390 XP_005262424 20 390 NP_694950 17 4312 NP_001121775 17 4312 XP_006719830 17 4312 XP_006719829 17 4312 XP_005266318 17 4312 NP_036214 16 5631 NP_002408 16 7355 NP_001139438 16 7355 XP_006717927 16 7355>NP_722576 Length = 3080 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MLPRESAMA 9 MLPRES+MA Sbjct: 1497 MLPRESSMA 1505>XP_005262424 Length = 2875 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 MLPRESAMA 9 MLPRES+MA Sbjct: 1292 MLPRESSMA 1300>NP_694950 Length = 430 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LPRESAMA 9 LPRESA A Sbjct: 345 LPRESAEA 352>NP_001121775 Length = 430 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LPRESAMA 9 LPRESA A Sbjct: 345 LPRESAEA 352>XP_006719830 Length = 428 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LPRESAMA 9 LPRESA A Sbjct: 345 LPRESAEA 352>XP_006719829 Length = 430 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LPRESAMA 9 LPRESA A Sbjct: 345 LPRESAEA 352>XP_005266318 Length = 430 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LPRESAMA 9 LPRESA A Sbjct: 345 LPRESAEA 352>NP_036214 Length = 1151 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 MLPRESAMA 9 +LP+++AMA Sbjct: 229 LLPQQAAMA 237>NP_002408 Length = 3256 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 PRESAMA 9 PRESA A Sbjct: 2790 PRESAQA 2796>NP_001139438 Length = 2896 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 PRESAMA 9 PRESA A Sbjct: 2430 PRESAQA 2436>XP_006717927 Length = 2406 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 PRESAMA 9 PRESA A Sbjct: 1940 PRESAQA 1946Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.320 0.120 0.313 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 542,405 Number of extensions: 326 Number of successful extensions: 11 Number of sequences better than 10000.0: 11 Number of HSP's gapped: 11 Number of HSP's successfully gapped: 11 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |