Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115894 17 2528 XP_005264828 17 2528 NP_114161 16 5631 XP_006713841 16 5631 NP_004988 16 7355 XP_005245254 16 7355 XP_005245253 16 7355 NP_620168 15 9605 NP_057445 15 9605 NP_001171473 15 9605 XP_006722720 15 9605 XP_006722719 15 9605 XP_006722718 15 9605 XP_006722717 15 9605 XP_006711427 15 9605 XP_005277457 15 9605 XP_006711426 15 9605>NP_115894 Length = 601 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LFIRSTQV 9 LF+R+TQV Sbjct: 536 LFVRATQV 543>XP_005264828 Length = 524 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LFIRSTQV 9 LF+R+TQV Sbjct: 459 LFVRATQV 466>NP_114161 Length = 569 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 FIRSTQV 9 FIRSTQ+ Sbjct: 439 FIRSTQL 445>XP_006713841 Length = 540 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 FIRSTQV 9 FIRSTQ+ Sbjct: 439 FIRSTQL 445>NP_004988 Length = 477 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MLFIRSTQ 8 +LFIRS Q Sbjct: 230 ILFIRSAQ 237>XP_005245254 Length = 315 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MLFIRSTQ 8 +LFIRS Q Sbjct: 68 ILFIRSAQ 75>XP_005245253 Length = 477 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MLFIRSTQ 8 +LFIRS Q Sbjct: 230 ILFIRSAQ 237>NP_620168 Length = 1300 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MLFIRSTQ 8 +LFIR+T+ Sbjct: 192 LLFIRATR 199>NP_057445 Length = 428 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LFIRSTQV 9 +FIRST + Sbjct: 159 VFIRSTNI 166>NP_001171473 Length = 1263 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MLFIRSTQ 8 +LFIR+T+ Sbjct: 139 LLFIRATR 146>XP_006722720 Length = 820 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MLFIRSTQ 8 +LFIR+T+ Sbjct: 192 LLFIRATR 199>XP_006722719 Length = 1224 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MLFIRSTQ 8 +LFIR+T+ Sbjct: 106 LLFIRATR 113>XP_006722718 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MLFIRSTQ 8 +LFIR+T+ Sbjct: 192 LLFIRATR 199>XP_006722717 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MLFIRSTQ 8 +LFIR+T+ Sbjct: 192 LLFIRATR 199>XP_006711427 Length = 228 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LFIRSTQV 9 +FIRST + Sbjct: 116 VFIRSTNI 123>XP_005277457 Length = 271 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LFIRSTQV 9 +FIRST + Sbjct: 159 VFIRSTNI 166>XP_006711426 Length = 385 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LFIRSTQV 9 +FIRST + Sbjct: 116 VFIRSTNI 123Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.347 0.144 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 290,325 Number of extensions: 364 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |