Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002961 17 4312 NP_001269588 15 9605 NP_060414 15 9605 XP_005253054 15 9605 XP_005270205 15 9605 NP_076950 15 9605>NP_002961 Length = 171 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 MKNISQMAL 9 +KN+SQ+A+ Sbjct: 110 LKNLSQVAM 118>NP_001269588 Length = 1355 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 MKNISQMAL 9 MK++SQ+A+ Sbjct: 1199 MKSMSQLAV 1207>NP_060414 Length = 1287 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 MKNISQMAL 9 MK++SQ+A+ Sbjct: 1131 MKSMSQLAV 1139>XP_005253054 Length = 1375 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 MKNISQMAL 9 MK++SQ+A+ Sbjct: 1219 MKSMSQLAV 1227>XP_005270205 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 KNISQMAL 9 KN+++MA+ Sbjct: 335 KNVTEMAM 342>NP_076950 Length = 737 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 KNISQMAL 9 KN+++MA+ Sbjct: 400 KNVTEMAM 407Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.121 0.283 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 276,062 Number of extensions: 268 Number of successful extensions: 6 Number of sequences better than 10000.0: 6 Number of HSP's gapped: 6 Number of HSP's successfully gapped: 6 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |