Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065928 18 1935 XP_005256527 18 1935 NP_955452 17 2528 XP_006713543 17 2528 NP_741996 17 3301 NP_001269828 16 5631 NP_001269829 16 5631 NP_001269830 16 5631 NP_001093867 16 5631 NP_001092882 16 5631 NP_006757 16 5631 NP_008954 16 5631 NP_001092883 16 5631 XP_006716734 16 5631 XP_006716732 16 5631 XP_006716731 16 5631 XP_006716730 16 5631 XP_005273706 16 5631 XP_006712269 16 5631 XP_006712268 16 5631 XP_005246303 16 5631 NP_006737 16 7355 NP_001153101 16 7355 NP_003636 16 7355 NP_001032624 16 7355 NP_001258349 16 7355 NP_001032625 16 7355 NP_060245 16 7355 NP_001032629 16 7355 XP_005274636 16 7355 XP_006724572 16 7355 XP_006724571 16 7355 XP_005274635 16 7355 NP_001108624 15 9605 NP_620061 15 9605>NP_065928 Length = 4427 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MKKNEISI 8 MKKN++SI Sbjct: 1682 MKKNQVSI 1689>XP_005256527 Length = 4427 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 MKKNEISI 8 MKKN++SI Sbjct: 1682 MKKNQVSI 1689>NP_955452 Length = 2590 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MKKNEISI 8 +KKNE+S+ Sbjct: 1430 LKKNEVSV 1437>XP_006713543 Length = 2591 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MKKNEISI 8 +KKNE+S+ Sbjct: 1431 LKKNEVSV 1438>NP_741996 Length = 1300 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 MKKNEISI 8 MK NEIS+ Sbjct: 1225 MKNNEISV 1232>NP_001269828 Length = 858 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 MKKNEISIF 9 +K N++S+F Sbjct: 570 LKPNDVSVF 578>NP_001269829 Length = 840 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 MKKNEISIF 9 +K N++S+F Sbjct: 552 LKPNDVSVF 560>NP_001269830 Length = 791 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 MKKNEISIF 9 +K N++S+F Sbjct: 503 LKPNDVSVF 511>NP_001093867 Length = 867 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 MKKNEISIF 9 +K N++S+F Sbjct: 579 LKPNDVSVF 587>NP_001092882 Length = 2004 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KKNEISIF 9 +KN IS+F Sbjct: 572 RKNNISVF 579>NP_006757 Length = 2004 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KKNEISIF 9 +KN IS+F Sbjct: 572 RKNNISVF 579>NP_008954 Length = 1011 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 MKKNEISIF 9 +K N++S+F Sbjct: 723 LKPNDVSVF 731>NP_001092883 Length = 2004 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KKNEISIF 9 +KN IS+F Sbjct: 572 RKNNISVF 579>XP_006716734 Length = 264 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KKNEISIF 9 KKNE+S F Sbjct: 18 KKNELSNF 25>XP_006716732 Length = 300 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KKNEISIF 9 KKNE+S F Sbjct: 18 KKNELSNF 25>XP_006716731 Length = 300 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KKNEISIF 9 KKNE+S F Sbjct: 18 KKNELSNF 25>XP_006716730 Length = 300 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KKNEISIF 9 KKNE+S F Sbjct: 18 KKNELSNF 25>XP_005273706 Length = 1997 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KKNEISIF 9 +KN IS+F Sbjct: 565 RKNNISVF 572>XP_006712269 Length = 838 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 MKKNEISIF 9 +K N++S+F Sbjct: 550 LKPNDVSVF 558>XP_006712268 Length = 840 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 MKKNEISIF 9 +K N++S+F Sbjct: 552 LKPNDVSVF 560>XP_005246303 Length = 993 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 MKKNEISIF 9 +K N++S+F Sbjct: 705 LKPNDVSVF 713>NP_006737 Length = 302 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 MKKNEI 6 MKKNE+ Sbjct: 95 MKKNEV 100>NP_001153101 Length = 567 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 MKKNEISIF 9 +KK+++SI+ Sbjct: 172 LKKDDVSIY 180>NP_003636 Length = 620 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 MKKNEISIF 9 +KK+++SI+ Sbjct: 172 LKKDDVSIY 180>NP_001032624 Length = 208 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 MKKNEI 6 MKKNE+ Sbjct: 1 MKKNEV 6>NP_001258349 Length = 273 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MKKNEISI 8 +KK+EIS+ Sbjct: 243 LKKDEISV 250>NP_001032625 Length = 208 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 MKKNEI 6 MKKNE+ Sbjct: 1 MKKNEV 6>NP_060245 Length = 380 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 MKKNEISI 8 +KK+EIS+ Sbjct: 350 LKKDEISV 357>NP_001032629 Length = 329 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 MKKNEI 6 MKKNE+ Sbjct: 122 MKKNEV 127>XP_005274636 Length = 301 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 MKKNEI 6 MKKNE+ Sbjct: 94 MKKNEV 99>XP_006724572 Length = 301 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 MKKNEI 6 MKKNE+ Sbjct: 94 MKKNEV 99>XP_006724571 Length = 329 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 MKKNEI 6 MKKNE+ Sbjct: 122 MKKNEV 127>XP_005274635 Length = 330 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 MKKNEI 6 MKKNE+ Sbjct: 123 MKKNEV 128>NP_001108624 Length = 194 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 MKKNEISI 8 +KKN +SI Sbjct: 74 VKKNRVSI 81>NP_620061 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 MKKNEIS 7 MKKN+I+ Sbjct: 29 MKKNQIT 35Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.135 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 452,310 Number of extensions: 583 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |