Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 19 665 NP_005659 16 7355 NP_001243275 15 9605 NP_001026872 15 9605 NP_001243277 15 9605 NP_001243276 15 9605>NP_002430 Length = 1137 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 MEFMTINVT 9 MEFMTIN T Sbjct: 532 MEFMTINGT 540>NP_005659 Length = 359 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 MEFMTINV 8 +EF T+NV Sbjct: 335 LEFKTLNV 342>NP_001243275 Length = 1151 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 MEFMTIN 7 MEF T+N Sbjct: 1096 MEFKTLN 1102>NP_001026872 Length = 1151 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 MEFMTIN 7 MEF T+N Sbjct: 1096 MEFKTLN 1102>NP_001243277 Length = 1057 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 MEFMTIN 7 MEF T+N Sbjct: 1002 MEFKTLN 1008>NP_001243276 Length = 1205 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 MEFMTIN 7 MEF T+N Sbjct: 1150 MEFKTLN 1156Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.133 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 271,526 Number of extensions: 283 Number of successful extensions: 6 Number of sequences better than 10000.0: 6 Number of HSP's gapped: 6 Number of HSP's successfully gapped: 6 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |