Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 18 1482 NP_001129157 18 1482 NP_996844 18 1482 XP_005254439 18 1482 XP_006720568 18 1482 XP_005254438 18 1482 NP_002335 18 1482>NP_004295 Length = 1620 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 MEALIISK 8 MEALIISK Sbjct: 1166 MEALIISK 1173>NP_001129157 Length = 734 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 MEALIISK 8 MEALIISK Sbjct: 430 MEALIISK 437>NP_996844 Length = 803 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 MEALIISK 8 MEALIISK Sbjct: 499 MEALIISK 506>XP_005254439 Length = 475 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 MEALIISK 8 MEALIISK Sbjct: 171 MEALIISK 178>XP_006720568 Length = 771 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 MEALIISK 8 MEALIISK Sbjct: 467 MEALIISK 474>XP_005254438 Length = 819 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 MEALIISK 8 MEALIISK Sbjct: 515 MEALIISK 522>NP_002335 Length = 864 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 MEALIISK 8 MEALIISK Sbjct: 560 MEALIISK 567Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.140 0.312 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 240,580 Number of extensions: 167 Number of successful extensions: 7 Number of sequences better than 10000.0: 7 Number of HSP's gapped: 7 Number of HSP's successfully gapped: 7 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |