Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001185761 18 1482 NP_001185763 18 1482 NP_055459 18 1482 XP_006726410 18 1482 XP_006711719 18 1482 XP_006711718 18 1482 XP_006711717 18 1482 XP_006711716 18 1482 XP_006711715 18 1482 XP_006711714 18 1482 XP_006711713 18 1482 XP_006711711 18 1482 XP_006711710 18 1482 XP_006711709 18 1482 XP_005277503 18 1482 XP_005273038 18 1482 XP_005277500 18 1482 XP_006711707 18 1482 XP_005277499 18 1482 XP_006711706 18 1482 XP_006711705 18 1482 XP_006711164 18 1482 XP_005276153 18 1482 XP_003846805 18 1482 NP_001177111 16 5631 NP_001108410 16 5631 NP_078886 16 5631 XP_005247818 16 5631 XP_005270591 16 5631 XP_006710452 16 5631 XP_006710451 16 5631 NP_671494 16 7355 NP_937770 16 7355>NP_001185761 Length = 2240 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 1941 LVAEVRALR 1949>NP_001185763 Length = 2362 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2047 LVAEVRALR 2055>NP_055459 Length = 2346 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2047 LVAEVRALR 2055>XP_006726410 Length = 2087 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 1788 LVAEVRALR 1796>XP_006711719 Length = 2302 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2003 LVAEVRALR 2011>XP_006711718 Length = 1436 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 1054 LVAEVRALR 1062>XP_006711717 Length = 2385 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2003 LVAEVRALR 2011>XP_006711716 Length = 2411 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2112 LVAEVRALR 2120>XP_006711715 Length = 2428 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2046 LVAEVRALR 2054>XP_006711714 Length = 2429 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2047 LVAEVRALR 2055>XP_006711713 Length = 2432 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2050 LVAEVRALR 2058>XP_006711711 Length = 2482 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2100 LVAEVRALR 2108>XP_006711710 Length = 2494 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2112 LVAEVRALR 2120>XP_006711709 Length = 2495 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2113 LVAEVRALR 2121>XP_005277503 Length = 2498 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2210 LVAEVRALR 2218>XP_005273038 Length = 2509 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2210 LVAEVRALR 2218>XP_005277500 Length = 2525 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2210 LVAEVRALR 2218>XP_006711707 Length = 2553 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2210 LVAEVRALR 2218>XP_005277499 Length = 2561 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2210 LVAEVRALR 2218>XP_006711706 Length = 2591 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2209 LVAEVRALR 2217>XP_006711705 Length = 2592 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 2210 LVAEVRALR 2218>XP_006711164 Length = 2087 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 1788 LVAEVRALR 1796>XP_005276153 Length = 267 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 43 LVAEVRALR 51>XP_003846805 Length = 306 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 LV EVRALR Sbjct: 43 LVAEVRALR 51>NP_001177111 Length = 613 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LVVEVRALR 9 L E+RALR Sbjct: 233 LAAEIRALR 241>NP_001108410 Length = 622 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LVVEVRALR 9 L E+RALR Sbjct: 242 LAAEIRALR 250>NP_078886 Length = 488 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVEVRALR 9 VVE++ALR Sbjct: 341 VVEIQALR 348>XP_005247818 Length = 460 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVEVRALR 9 VVE++ALR Sbjct: 313 VVEIQALR 320>XP_005270591 Length = 443 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LVVEVRALR 9 L E+RALR Sbjct: 63 LAAEIRALR 71>XP_006710452 Length = 660 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LVVEVRALR 9 L E+RALR Sbjct: 233 LAAEIRALR 241>XP_006710451 Length = 669 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LVVEVRALR 9 L E+RALR Sbjct: 242 LAAEIRALR 250>NP_671494 Length = 1249 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LVVEVRAL 8 LVVEVR L Sbjct: 1230 LVVEVRRL 1237>NP_937770 Length = 472 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVVEVRALR 9 +V EVRA+R Sbjct: 401 IVEEVRAIR 409Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.150 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 240,846 Number of extensions: 250 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |