Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_009057 17 4312 NP_060656 16 7355 NP_001273903 16 7355 NP_003789 16 7355 NP_116170 16 7355 NP_008837 16 7355 NP_001265167 16 7355 XP_005252348 16 7355 XP_005245376 16 7355 XP_005245374 16 7355 NP_076996 15 9605 XP_006714561 15 9605>NP_009057 Length = 806 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LVSQLLTII 9 +VSQLLT++ Sbjct: 324 IVSQLLTLM 332>NP_060656 Length = 853 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LVSQLLT 7 L+SQLLT Sbjct: 313 LISQLLT 319>NP_001273903 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVSQLLTII 9 LVSQ+ T+I Sbjct: 44 LVSQITTLI 52>NP_003789 Length = 734 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVSQLLTII 9 LVSQ+ T+I Sbjct: 44 LVSQITTLI 52>NP_116170 Length = 565 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVSQLLTII 9 LVS LLT++ Sbjct: 119 LVSSLLTLL 127>NP_008837 Length = 565 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVSQLLTII 9 LVS LLT++ Sbjct: 119 LVSSLLTLL 127>NP_001265167 Length = 541 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVSQLLTII 9 LVS LLT++ Sbjct: 95 LVSSLLTLL 103>XP_005252348 Length = 732 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVSQLLTII 9 LVSQ+ T+I Sbjct: 44 LVSQITTLI 52>XP_005245376 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LVSQLLT 7 L+SQLLT Sbjct: 178 LISQLLT 184>XP_005245374 Length = 911 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LVSQLLT 7 L+SQLLT Sbjct: 371 LISQLLT 377>NP_076996 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVSQLLTII 9 L+SQ+LT + Sbjct: 295 LISQMLTAL 303>XP_006714561 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVSQLLTII 9 L+SQ+LT + Sbjct: 295 LISQMLTAL 303Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.337 0.151 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 295,205 Number of extensions: 261 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |