Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065681 20 390 NP_066124 20 390 XP_006717999 20 390 NP_001258558 17 4312 NP_005911 17 4312 NP_071903 17 4312 XP_005249613 17 4312 XP_006711396 17 4312 XP_005245226 17 4312 XP_005245227 17 4312 XP_006711394 17 4312 XP_006711393 17 4312 NP_775823 16 5631 NP_001265209 16 7355 NP_060916 16 7355 NP_001265210 16 7355 NP_690909 16 7355 NP_001010983 16 7355 NP_079390 16 7355 NP_003346 16 7355 XP_006719673 16 7355 XP_005269218 16 7355 XP_005269217 16 7355 XP_006719672 16 7355 XP_005269215 16 7355 XP_006713323 16 7355 NP_001278017 15 9605 NP_114157 15 9605 NP_997191 15 9605 NP_065976 15 9605 NP_115927 15 9605 NP_001152956 15 9605 NP_056083 15 9605 XP_006723474 15 9605 XP_005259362 15 9605 XP_006715292 15 9605 XP_005247302 15 9605 XP_006711682 15 9605 XP_006710856 15 9605>NP_065681 Length = 1072 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LVRRYTSTV 9 LVRRYTST+ Sbjct: 310 LVRRYTSTL 318>NP_066124 Length = 1114 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LVRRYTSTV 9 LVRRYTST+ Sbjct: 310 LVRRYTSTL 318>XP_006717999 Length = 1207 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LVRRYTSTV 9 LVRRYTST+ Sbjct: 403 LVRRYTSTL 411>NP_001258558 Length = 514 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LVRRYTSTV 9 L RRY STV Sbjct: 127 LFRRYGSTV 135>NP_005911 Length = 521 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LVRRYTSTV 9 L RRY STV Sbjct: 127 LFRRYGSTV 135>NP_071903 Length = 490 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVRRYTSTV 9 LVR++TS V Sbjct: 446 LVRKFTSAV 454>XP_005249613 Length = 338 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVRRYTSTV 9 LVR++TS V Sbjct: 294 LVRKFTSAV 302>XP_006711396 Length = 514 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LVRRYTSTV 9 L RRY STV Sbjct: 127 LFRRYGSTV 135>XP_005245226 Length = 521 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LVRRYTSTV 9 L RRY STV Sbjct: 127 LFRRYGSTV 135>XP_005245227 Length = 521 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LVRRYTSTV 9 L RRY STV Sbjct: 127 LFRRYGSTV 135>XP_006711394 Length = 521 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LVRRYTSTV 9 L RRY STV Sbjct: 127 LFRRYGSTV 135>XP_006711393 Length = 521 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LVRRYTSTV 9 L RRY STV Sbjct: 127 LFRRYGSTV 135>NP_775823 Length = 430 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LVRRYTST 8 LVRRY T Sbjct: 179 LVRRYAET 186>NP_001265209 Length = 371 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LVRRYT 6 L+RRYT Sbjct: 360 LIRRYT 365>NP_060916 Length = 371 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LVRRYT 6 L+RRYT Sbjct: 360 LIRRYT 365>NP_001265210 Length = 371 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LVRRYT 6 L+RRYT Sbjct: 360 LIRRYT 365>NP_690909 Length = 371 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LVRRYT 6 L+RRYT Sbjct: 360 LIRRYT 365>NP_001010983 Length = 371 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LVRRYT 6 L+RRYT Sbjct: 360 LIRRYT 365>NP_079390 Length = 2479 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVRRYTSTV 9 L+R+YT+ V Sbjct: 896 LIRQYTTLV 904>NP_003346 Length = 309 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RRYTSTV 9 RRY STV Sbjct: 154 RRYQSTV 160>XP_006719673 Length = 1997 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVRRYTSTV 9 L+R+YT+ V Sbjct: 414 LIRQYTTLV 422>XP_005269218 Length = 2009 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVRRYTSTV 9 L+R+YT+ V Sbjct: 426 LIRQYTTLV 434>XP_005269217 Length = 2353 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVRRYTSTV 9 L+R+YT+ V Sbjct: 927 LIRQYTTLV 935>XP_006719672 Length = 2510 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVRRYTSTV 9 L+R+YT+ V Sbjct: 927 LIRQYTTLV 935>XP_005269215 Length = 2510 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVRRYTSTV 9 L+R+YT+ V Sbjct: 927 LIRQYTTLV 935>XP_006713323 Length = 371 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LVRRYT 6 L+RRYT Sbjct: 360 LIRRYT 365>NP_001278017 Length = 2912 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VRRYTST 8 V+R+TST Sbjct: 232 VKRFTST 238>NP_114157 Length = 2873 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VRRYTST 8 V+R+TST Sbjct: 193 VKRFTST 199>NP_997191 Length = 1888 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RRYTST 8 R+YTST Sbjct: 1070 RKYTST 1075>NP_065976 Length = 1223 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LVRRYTST 8 +VRRY +T Sbjct: 677 IVRRYIAT 684>NP_115927 Length = 1321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LVRRYTST 8 L R+YT+T Sbjct: 179 LARQYTNT 186>NP_001152956 Length = 1736 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RRYTST 8 R+YTST Sbjct: 1070 RKYTST 1075>NP_056083 Length = 2243 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VRRYTST 8 VR+Y+ST Sbjct: 303 VRKYSST 309>XP_006723474 Length = 2737 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VRRYTST 8 V+R+TST Sbjct: 232 VKRFTST 238>XP_005259362 Length = 2855 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VRRYTST 8 V+R+TST Sbjct: 175 VKRFTST 181>XP_006715292 Length = 759 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LVRRYTST 8 L R+YT+T Sbjct: 166 LARQYTNT 173>XP_005247302 Length = 2248 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VRRYTST 8 VR+Y+ST Sbjct: 303 VRKYSST 309>XP_006711682 Length = 1739 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RRYTST 8 R+YTST Sbjct: 921 RKYTST 926>XP_006710856 Length = 978 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LVRRYTST 8 +VRRY +T Sbjct: 432 IVRRYIAT 439Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.133 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 413,836 Number of extensions: 514 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |