Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 19 665 NP_671714 19 665 XP_006715890 19 665 XP_005250160 19 665 XP_005250159 19 665 NP_005348 18 1935 XP_005258994 18 1935 NP_055951 17 2528 XP_005265031 17 2528 XP_005265030 17 2528 NP_996832 17 3301 XP_006725224 17 3301 XP_005267371 17 3301 NP_660292 17 3301 XP_005264802 17 4312 NP_776185 17 4312 NP_000426 16 5631 NP_149118 16 5631 XP_005259981 16 5631 NP_000227 15 9605 NP_001161210 15 9605 NP_116165 15 9605 NP_065176 15 9605 NP_001269877 15 9605 NP_061113 15 9605 NP_001229518 15 9605 NP_054760 15 9605 NP_062541 15 9605 NP_671494 15 9605 NP_001138548 15 9605 NP_006268 15 9605 NP_061936 15 9605 NP_006480 15 9605 NP_002506 15 9605 XP_006725154 15 9605 XP_006720565 15 9605 XP_005254431 15 9605 XP_006720564 15 9605 XP_005254429 15 9605 XP_005267764 15 9605 XP_005269685 15 9605 XP_005269684 15 9605 XP_005269683 15 9605 XP_005269681 15 9605 XP_006717770 15 9605 XP_005269679 15 9605 XP_006716678 15 9605 XP_005264325 15 9605 XP_006712054 15 9605 XP_005264324 15 9605 XP_006711674 15 9605 XP_006711673 15 9605 XP_006711672 15 9605 XP_006711671 15 9605 XP_006711670 15 9605 XP_005245629 15 9605 NP_001094348 15 9605>NP_005742 Length = 3907 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV SGFAGT Sbjct: 1825 LVRSGFAGT 1833>NP_671714 Length = 3899 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV SGFAGT Sbjct: 1825 LVRSGFAGT 1833>XP_006715890 Length = 3860 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV SGFAGT Sbjct: 1778 LVRSGFAGT 1786>XP_005250160 Length = 3939 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV SGFAGT Sbjct: 1857 LVRSGFAGT 1865>XP_005250159 Length = 3952 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV SGFAGT Sbjct: 1857 LVRSGFAGT 1865>NP_005348 Length = 1076 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VMSGFAGT 9 VMSG++GT Sbjct: 270 VMSGYSGT 277>XP_005258994 Length = 1000 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VMSGFAGT 9 VMSG++GT Sbjct: 270 VMSGYSGT 277>NP_055951 Length = 2570 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LVMSGFAGT 9 L SGFAGT Sbjct: 1996 LCRSGFAGT 2004>XP_005265031 Length = 2569 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LVMSGFAGT 9 L SGFAGT Sbjct: 1996 LCRSGFAGT 2004>XP_005265030 Length = 2595 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LVMSGFAGT 9 L SGFAGT Sbjct: 1996 LCRSGFAGT 2004>NP_996832 Length = 104 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VMSGFAGT 9 V+ GFAGT Sbjct: 85 VIGGFAGT 92>XP_006725224 Length = 129 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VMSGFAGT 9 V+ GFAGT Sbjct: 110 VIGGFAGT 117>XP_005267371 Length = 129 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VMSGFAGT 9 V+ GFAGT Sbjct: 110 VIGGFAGT 117>NP_660292 Length = 104 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VMSGFAGT 9 V+ GFAGT Sbjct: 85 VIGGFAGT 92>XP_005264802 Length = 328 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LVMSGFAGT 9 LVM G AGT Sbjct: 230 LVMVGVAGT 238>NP_776185 Length = 329 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LVMSGFAGT 9 LVM G AGT Sbjct: 231 LVMVGVAGT 239>NP_000426 Length = 2321 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMSGFAGT 9 + M+GF GT Sbjct: 456 ICMAGFTGT 464>NP_149118 Length = 1060 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VMSGFAGT 9 VMSGF T Sbjct: 485 VMSGFTST 492>XP_005259981 Length = 2269 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMSGFAGT 9 + M+GF GT Sbjct: 456 ICMAGFTGT 464>NP_000227 Length = 499 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSGFAGT 9 +SGFAG+ Sbjct: 173 VSGFAGS 179>NP_001161210 Length = 1483 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV+SG +GT Sbjct: 1160 LVLSGPSGT 1168>NP_116165 Length = 2540 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 SGFAGT 9 SGF+GT Sbjct: 1471 SGFSGT 1476>NP_065176 Length = 1877 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV+SG +GT Sbjct: 1554 LVLSGPSGT 1562>NP_001269877 Length = 2358 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 SGFAGT 9 SGF+GT Sbjct: 1289 SGFSGT 1294>NP_061113 Length = 234 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMSGFAGT 9 +V GF+GT Sbjct: 132 VVTKGFSGT 140>NP_001229518 Length = 225 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMSGFAGT 9 +V GF+GT Sbjct: 132 VVTKGFSGT 140>NP_054760 Length = 169 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LVMSGFA 7 +VM+GFA Sbjct: 118 IVMAGFA 124>NP_062541 Length = 1670 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LVMSGFAG 8 L+M GF G Sbjct: 195 LMMGGFGG 202>NP_671494 Length = 1249 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LVMSGFAG 8 L+M GF G Sbjct: 195 LMMGGFGG 202>NP_001138548 Length = 923 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MSGFAGT 9 M GFAG+ Sbjct: 1 MDGFAGS 7>NP_006268 Length = 1697 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LVMSGFAG 8 L+M GF G Sbjct: 195 LMMGGFGG 202>NP_061936 Length = 981 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MSGFAGT 9 M GFAG+ Sbjct: 1 MDGFAGS 7>NP_006480 Length = 483 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VMSGFAG 8 V+SGF G Sbjct: 279 VLSGFTG 285>NP_002506 Length = 507 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VMSGFAG 8 V+SGF G Sbjct: 303 VLSGFTG 309>XP_006725154 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 SGFAGT 9 +GFAGT Sbjct: 123 AGFAGT 128>XP_006720565 Length = 452 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSGFAGT 9 +SGFAG+ Sbjct: 126 VSGFAGS 132>XP_005254431 Length = 478 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSGFAGT 9 +SGFAG+ Sbjct: 152 VSGFAGS 158>XP_006720564 Length = 499 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSGFAGT 9 +SGFAG+ Sbjct: 173 VSGFAGS 179>XP_005254429 Length = 499 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 MSGFAGT 9 +SGFAG+ Sbjct: 173 VSGFAGS 179>XP_005267764 Length = 385 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 VMSGFAG 8 V+SGF G Sbjct: 181 VLSGFTG 187>XP_005269685 Length = 1700 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 SGFAGT 9 SGF+GT Sbjct: 1471 SGFSGT 1476>XP_005269684 Length = 2032 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 SGFAGT 9 SGF+GT Sbjct: 1471 SGFSGT 1476>XP_005269683 Length = 2252 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 SGFAGT 9 SGF+GT Sbjct: 1183 SGFSGT 1188>XP_005269681 Length = 2321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 SGFAGT 9 SGF+GT Sbjct: 1252 SGFSGT 1257>XP_006717770 Length = 2358 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 SGFAGT 9 SGF+GT Sbjct: 1289 SGFSGT 1294>XP_005269679 Length = 2502 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 SGFAGT 9 SGF+GT Sbjct: 1433 SGFSGT 1438>XP_006716678 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 SGFAGT 9 +GFAGT Sbjct: 123 AGFAGT 128>XP_005264325 Length = 762 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MSGFAGT 9 M GFAG+ Sbjct: 1 MDGFAGS 7>XP_006712054 Length = 934 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MSGFAGT 9 M GFAG+ Sbjct: 1 MDGFAGS 7>XP_005264324 Length = 992 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MSGFAGT 9 M GFAG+ Sbjct: 1 MDGFAGS 7>XP_006711674 Length = 1385 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV+SG +GT Sbjct: 1062 LVLSGPSGT 1070>XP_006711673 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV+SG +GT Sbjct: 1226 LVLSGPSGT 1234>XP_006711672 Length = 1557 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV+SG +GT Sbjct: 1234 LVLSGPSGT 1242>XP_006711671 Length = 2153 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV+SG +GT Sbjct: 1830 LVLSGPSGT 1838>XP_006711670 Length = 2161 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV+SG +GT Sbjct: 1838 LVLSGPSGT 1846>XP_005245629 Length = 2164 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVMSGFAGT 9 LV+SG +GT Sbjct: 1841 LVLSGPSGT 1849>NP_001094348 Length = 719 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 SGFAGT 9 +GFAGT Sbjct: 123 AGFAGT 128Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 442,726 Number of extensions: 615 Number of successful extensions: 57 Number of sequences better than 10000.0: 57 Number of HSP's gapped: 57 Number of HSP's successfully gapped: 57 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |