Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001239049 16 5631 NP_055963 16 5631 NP_001239053 16 5631 NP_001239051 16 5631 NP_001239048 16 5631 XP_006725868 16 5631 XP_006725749 16 5631 XP_005247048 16 5631 XP_005247047 16 5631 NP_001231743 16 7355 NP_001231741 16 7355 NP_001231739 16 7355 NP_001231745 16 7355 NP_116071 16 7355 NP_001231744 16 7355 NP_001231742 16 7355 NP_001231737 16 7355 XP_005264786 16 7355 XP_006713169 16 7355 XP_005264799 16 7355 XP_006713168 16 7355 XP_005264795 16 7355 XP_005264794 16 7355 XP_006713167 16 7355 XP_006713166 16 7355 XP_006713165 16 7355 XP_005264793 16 7355 XP_005264792 16 7355 NP_079331 15 9605 NP_612201 15 9605 XP_006721797 15 9605 XP_006721796 15 9605 XP_006720761 15 9605 XP_005254749 15 9605 XP_006720760 15 9605 NP_705834 15 9605 NP_001157394 15 9605>NP_001239049 Length = 1323 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LVMESHSS 8 LVME H S Sbjct: 1079 LVMEKHGS 1086>NP_055963 Length = 1323 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LVMESHSS 8 LVME H S Sbjct: 1079 LVMEKHGS 1086>NP_001239053 Length = 1143 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LVMESHSS 8 LVME H S Sbjct: 1079 LVMEKHGS 1086>NP_001239051 Length = 1288 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LVMESHSS 8 LVME H S Sbjct: 1044 LVMEKHGS 1051>NP_001239048 Length = 1330 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LVMESHSS 8 LVME H S Sbjct: 1079 LVMEKHGS 1086>XP_006725868 Length = 315 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VMESHSS 8 +M+SHSS Sbjct: 23 IMQSHSS 29>XP_006725749 Length = 315 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VMESHSS 8 +M+SHSS Sbjct: 23 IMQSHSS 29>XP_005247048 Length = 1107 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LVMESHSS 8 LVME H S Sbjct: 863 LVMEKHGS 870>XP_005247047 Length = 1137 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LVMESHSS 8 LVME H S Sbjct: 893 LVMEKHGS 900>NP_001231743 Length = 677 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 269 LIMNPHAST 277>NP_001231741 Length = 601 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 193 LIMNPHAST 201>NP_001231739 Length = 693 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 269 LIMNPHAST 277>NP_001231745 Length = 677 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 269 LIMNPHAST 277>NP_116071 Length = 677 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 269 LIMNPHAST 277>NP_001231744 Length = 679 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 271 LIMNPHAST 279>NP_001231742 Length = 577 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 169 LIMNPHAST 177>NP_001231737 Length = 676 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 269 LIMNPHAST 277>XP_005264786 Length = 693 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 269 LIMNPHAST 277>XP_006713169 Length = 568 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 271 LIMNPHAST 279>XP_005264799 Length = 576 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 168 LIMNPHAST 176>XP_006713168 Length = 584 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 176 LIMNPHAST 184>XP_005264795 Length = 676 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 269 LIMNPHAST 277>XP_005264794 Length = 676 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 268 LIMNPHAST 276>XP_006713167 Length = 677 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 269 LIMNPHAST 277>XP_006713166 Length = 677 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 269 LIMNPHAST 277>XP_006713165 Length = 677 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 269 LIMNPHAST 277>XP_005264793 Length = 678 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 271 LIMNPHAST 279>XP_005264792 Length = 678 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVMESHSST 9 L+M H+ST Sbjct: 270 LIMNPHAST 278>NP_079331 Length = 755 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVMESHSST 9 LV+E +SST Sbjct: 287 LVLEYYSST 295>NP_612201 Length = 404 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VMESHSS 8 ++ESHSS Sbjct: 62 LLESHSS 68>XP_006721797 Length = 362 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VMESHSS 8 ++ESHSS Sbjct: 20 LLESHSS 26>XP_006721796 Length = 396 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 VMESHSS 8 ++ESHSS Sbjct: 54 LLESHSS 60>XP_006720761 Length = 786 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVMESHSST 9 LV+E +SST Sbjct: 287 LVLEYYSST 295>XP_005254749 Length = 820 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVMESHSST 9 LV+E +SST Sbjct: 287 LVLEYYSST 295>XP_006720760 Length = 998 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVMESHSST 9 LV+E +SST Sbjct: 511 LVLEYYSST 519>NP_705834 Length = 594 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MESHSST 9 MES+SST Sbjct: 178 MESNSST 184>NP_001157394 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MESHSST 9 +E HSST Sbjct: 848 LEDHSST 854Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.300 0.104 0.249 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 559,631 Number of extensions: 569 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |