Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 18 1135 XP_006718907 18 1135 XP_006718906 18 1135 XP_005271619 18 1135 XP_005271618 18 1135 NP_001274359 17 3301 NP_001007243 17 3301 NP_001274355 17 3301 NP_001274358 17 3301 NP_003355 17 3301 NP_001274357 17 3301 XP_005255318 17 3301 XP_005255316 17 3301 XP_005249895 17 3301 NP_001007241 17 3301 NP_001007242 17 3301 NP_001493 17 3301 NP_003943 16 7355 NP_056151 16 7355 NP_001107604 16 7355 NP_115830 16 7355 NP_004188 16 7355 NP_055646 16 7355 XP_005268808 16 7355 XP_006718720 16 7355 XP_006718719 16 7355 XP_005274222 16 7355 XP_006718718 16 7355 XP_005274221 16 7355 XP_006713495 16 7355 XP_006712765 16 7355 XP_006712764 16 7355 XP_005246844 16 7355 XP_006712763 16 7355 XP_006712762 16 7355 XP_006712761 16 7355 NP_852091 15 9605 NP_003038 15 9605 NP_055616 15 9605 NP_059129 15 9605 NP_872409 15 9605 XP_006718595 15 9605 XP_006717897 15 9605 XP_006717896 15 9605 XP_005273329 15 9605>NP_000042 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKYFIKRA 9 LVKYFIK A Sbjct: 100 LVKYFIKCA 108>XP_006718907 Length = 3050 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKYFIKRA 9 LVKYFIK A Sbjct: 100 LVKYFIKCA 108>XP_006718906 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKYFIKRA 9 LVKYFIK A Sbjct: 100 LVKYFIKCA 108>XP_005271619 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKYFIKRA 9 LVKYFIK A Sbjct: 100 LVKYFIKCA 108>XP_005271618 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKYFIKRA 9 LVKYFIK A Sbjct: 100 LVKYFIKCA 108>NP_001274359 Length = 173 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LV YFIK+ Sbjct: 161 LVSYFIKK 168>NP_001007243 Length = 387 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVKYFI R Sbjct: 262 LVKYFIIR 269>NP_001274355 Length = 310 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LV YFIK+ Sbjct: 298 LVSYFIKK 305>NP_001274358 Length = 173 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LV YFIK+ Sbjct: 161 LVSYFIKK 168>NP_003355 Length = 310 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LV YFIK+ Sbjct: 298 LVSYFIKK 305>NP_001274357 Length = 173 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LV YFIK+ Sbjct: 161 LVSYFIKK 168>XP_005255318 Length = 512 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVKYFI R Sbjct: 387 LVKYFIIR 394>XP_005255316 Length = 659 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVKYFI R Sbjct: 534 LVKYFIIR 541>XP_005249895 Length = 246 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LV YFIK+ Sbjct: 234 LVSYFIKK 241>NP_001007241 Length = 537 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVKYFI R Sbjct: 412 LVKYFIIR 419>NP_001007242 Length = 390 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVKYFI R Sbjct: 265 LVKYFIIR 272>NP_001493 Length = 534 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVKYFI R Sbjct: 409 LVKYFIIR 416>NP_003943 Length = 482 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVK F+KR Sbjct: 299 LVKKFLKR 306>NP_056151 Length = 632 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVKY+I + Sbjct: 105 LVKYYISK 112>NP_001107604 Length = 2694 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LVKYFIKR 8 +VK+FI+R Sbjct: 936 IVKHFIQR 943>NP_115830 Length = 368 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 2 VKYFIK 7 +KYF+K Sbjct: 299 IKYFVK 304>NP_004188 Length = 364 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 2 VKYFIK 7 +KYF+K Sbjct: 295 IKYFVK 300>NP_055646 Length = 2925 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 KYFIKR 8 KYFI+R Sbjct: 1669 KYFIRR 1674>XP_005268808 Length = 266 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVKY+I + Sbjct: 105 LVKYYISK 112>XP_006718720 Length = 282 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVK F+KR Sbjct: 99 LVKKFLKR 106>XP_006718719 Length = 282 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVK F+KR Sbjct: 99 LVKKFLKR 106>XP_005274222 Length = 282 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVK F+KR Sbjct: 99 LVKKFLKR 106>XP_006718718 Length = 282 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVK F+KR Sbjct: 99 LVKKFLKR 106>XP_005274221 Length = 385 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVK F+KR Sbjct: 202 LVKKFLKR 209>XP_006713495 Length = 2969 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 KYFIKR 8 KYFI+R Sbjct: 1713 KYFIRR 1718>XP_006712765 Length = 2679 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LVKYFIKR 8 +VK+FI+R Sbjct: 908 IVKHFIQR 915>XP_006712764 Length = 2697 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LVKYFIKR 8 +VK+FI+R Sbjct: 965 IVKHFIQR 972>XP_005246844 Length = 2707 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LVKYFIKR 8 +VK+FI+R Sbjct: 936 IVKHFIQR 943>XP_006712763 Length = 2716 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LVKYFIKR 8 +VK+FI+R Sbjct: 965 IVKHFIQR 972>XP_006712762 Length = 2723 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LVKYFIKR 8 +VK+FI+R Sbjct: 965 IVKHFIQR 972>XP_006712761 Length = 2736 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LVKYFIKR 8 +VK+FI+R Sbjct: 965 IVKHFIQR 972>NP_852091 Length = 941 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 YFIKRA 9 YFIK+A Sbjct: 513 YFIKKA 518>NP_003038 Length = 815 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 2 VKYFIK 7 +KYF+K Sbjct: 379 IKYFLK 384>NP_055616 Length = 2137 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 LVKYFIK 7 L++Y+IK Sbjct: 1529 LIRYYIK 1535>NP_059129 Length = 1616 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LVKYFIKR 8 LVK F+KR Sbjct: 111 LVKGFLKR 118>NP_872409 Length = 389 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VKYFIK 7 VKYFI+ Sbjct: 341 VKYFIR 346>XP_006718595 Length = 505 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VKYFIK 7 VKYFI+ Sbjct: 341 VKYFIR 346>XP_006717897 Length = 1160 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VKYFIK 7 +KYFIK Sbjct: 224 LKYFIK 229>XP_006717896 Length = 1186 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 VKYFIK 7 +KYFIK Sbjct: 250 LKYFIK 255>XP_005273329 Length = 1934 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 LVKYFIK 7 L++Y+IK Sbjct: 1326 LIRYYIK 1332Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.345 0.154 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 403,690 Number of extensions: 529 Number of successful extensions: 45 Number of sequences better than 10000.0: 45 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 45 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |