Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 18 1935 NP_444254 18 1935 NP_444253 18 1935 NP_444255 18 1935 XP_005247551 18 1935 XP_005247550 18 1935 XP_006713712 18 1935 XP_005247549 18 1935 NP_001248359 17 2528 NP_001136126 17 2528 NP_001136125 17 2528 NP_001129514 17 2528 NP_079543 17 2528 NP_001229814 16 5631 NP_055029 16 5631 NP_001263309 16 5631 NP_057733 16 5631 NP_758424 16 7355 NP_061142 16 7355 NP_689914 16 7355 NP_001135768 15 9605 NP_001135766 15 9605 NP_001135767 15 9605 NP_055902 15 9605 NP_065997 15 9605 NP_079096 15 9605 NP_001364 15 9605 NP_066990 15 9605 XP_005266373 15 9605 XP_005266372 15 9605 XP_005266374 15 9605 XP_005266370 15 9605 XP_005266371 15 9605 XP_005252170 15 9605 XP_005252168 15 9605 XP_006717258 15 9605 XP_005252166 15 9605 XP_006711798 15 9605>NP_444256 Length = 1794 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 L KKVSTKT Sbjct: 832 LGKKVSTKT 840>NP_444254 Length = 1845 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 L KKVSTKT Sbjct: 832 LGKKVSTKT 840>NP_444253 Length = 1914 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 L KKVSTKT Sbjct: 901 LGKKVSTKT 909>NP_444255 Length = 1863 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 L KKVSTKT Sbjct: 901 LGKKVSTKT 909>XP_005247551 Length = 1855 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 L KKVSTKT Sbjct: 842 LGKKVSTKT 850>XP_005247550 Length = 1856 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 L KKVSTKT Sbjct: 911 LGKKVSTKT 919>XP_006713712 Length = 1923 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 L KKVSTKT Sbjct: 911 LGKKVSTKT 919>XP_005247549 Length = 1924 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 L KKVSTKT Sbjct: 911 LGKKVSTKT 919>NP_001248359 Length = 199 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LVKKVSTK 8 L+KKVSTK Sbjct: 170 LLKKVSTK 177>NP_001136126 Length = 161 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LVKKVSTK 8 L+KKVSTK Sbjct: 132 LLKKVSTK 139>NP_001136125 Length = 166 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LVKKVSTK 8 L+KKVSTK Sbjct: 137 LLKKVSTK 144>NP_001129514 Length = 586 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LVKKVSTK 8 L+KKVSTK Sbjct: 170 LLKKVSTK 177>NP_079543 Length = 525 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LVKKVSTK 8 L+KKVSTK Sbjct: 109 LLKKVSTK 116>NP_001229814 Length = 125 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 ++KK+ TKT Sbjct: 66 VIKKMQTKT 74>NP_055029 Length = 288 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 KKVSTKT 9 K+VSTKT Sbjct: 42 KRVSTKT 48>NP_001263309 Length = 851 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVKKVSTKT 9 L+K + TKT Sbjct: 831 LIKSIKTKT 839>NP_057733 Length = 851 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LVKKVSTKT 9 L+K + TKT Sbjct: 831 LIKSIKTKT 839>NP_758424 Length = 1642 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VKKVSTK 8 VKKV+TK Sbjct: 1311 VKKVATK 1317>NP_061142 Length = 1642 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VKKVSTK 8 VKKV+TK Sbjct: 1311 VKKVATK 1317>NP_689914 Length = 5058 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LVKKVSTK 8 LVKKVS K Sbjct: 2528 LVKKVSGK 2535>NP_001135768 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 +VKK +T+T Sbjct: 612 MVKKTATQT 620>NP_001135766 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 +VKK +T+T Sbjct: 612 MVKKTATQT 620>NP_001135767 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 +VKK +T+T Sbjct: 612 MVKKTATQT 620>NP_055902 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 +VKK +T+T Sbjct: 612 MVKKTATQT 620>NP_065997 Length = 1009 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKKVSTKT 9 +KKVST T Sbjct: 297 LKKVSTTT 304>NP_079096 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKKVSTKT 9 +KKVST T Sbjct: 297 LKKVSTTT 304>NP_001364 Length = 4515 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LVKKVSTKT 9 L K+STKT Sbjct: 4441 LPTKISTKT 4449>NP_066990 Length = 269 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 KKVSTK 8 KKVSTK Sbjct: 108 KKVSTK 113>XP_005266373 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 +VKK +T+T Sbjct: 612 MVKKTATQT 620>XP_005266372 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 +VKK +T+T Sbjct: 612 MVKKTATQT 620>XP_005266374 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 +VKK +T+T Sbjct: 612 MVKKTATQT 620>XP_005266370 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 +VKK +T+T Sbjct: 612 MVKKTATQT 620>XP_005266371 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LVKKVSTKT 9 +VKK +T+T Sbjct: 612 MVKKTATQT 620>XP_005252170 Length = 574 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKKVSTKT 9 +KKVST T Sbjct: 312 LKKVSTTT 319>XP_005252168 Length = 1024 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKKVSTKT 9 +KKVST T Sbjct: 312 LKKVSTTT 319>XP_006717258 Length = 1067 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKKVSTKT 9 +KKVST T Sbjct: 312 LKKVSTTT 319>XP_005252166 Length = 1070 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VKKVSTKT 9 +KKVST T Sbjct: 297 LKKVSTTT 304>XP_006711798 Length = 4586 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LVKKVSTKT 9 L K+STKT Sbjct: 4512 LPTKISTKT 4520Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.302 0.113 0.255 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 296,773 Number of extensions: 421 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |