Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_570711 18 1935 NP_570712 18 1935 NP_570714 18 1935 NP_570713 18 1935 NP_570716 18 1935 NP_000235 18 1935 NP_570715 18 1935 XP_006718620 18 1935 XP_005274059 18 1935 XP_005274060 18 1935 XP_005274058 18 1935 NP_001274141 17 3301 NP_004789 17 3301 NP_008985 17 3301 NP_065867 17 3301 NP_001116291 17 3301 XP_005271926 17 3301 XP_006714589 17 3301 XP_005271925 17 3301 XP_005246008 17 3301 XP_005246007 17 3301 NP_036562 16 5631 NP_065944 15 9605 NP_149053 15 9605 NP_997297 15 9605>NP_570711 Length = 610 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVATKIN S Sbjct: 565 LVATKINSS 573>NP_570712 Length = 615 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVATKIN S Sbjct: 570 LVATKINSS 578>NP_570714 Length = 615 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVATKIN S Sbjct: 570 LVATKINSS 578>NP_570713 Length = 615 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVATKIN S Sbjct: 570 LVATKINSS 578>NP_570716 Length = 615 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVATKIN S Sbjct: 570 LVATKINSS 578>NP_000235 Length = 615 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVATKIN S Sbjct: 570 LVATKINSS 578>NP_570715 Length = 615 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVATKIN S Sbjct: 570 LVATKINSS 578>XP_006718620 Length = 610 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVATKIN S Sbjct: 565 LVATKINSS 573>XP_005274059 Length = 610 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVATKIN S Sbjct: 565 LVATKINSS 573>XP_005274060 Length = 610 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVATKIN S Sbjct: 565 LVATKINSS 573>XP_005274058 Length = 610 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVATKIN S Sbjct: 565 LVATKINSS 573>NP_001274141 Length = 929 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ATKINLS 9 ATKINLS Sbjct: 160 ATKINLS 166>NP_004789 Length = 747 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ATKINLS 9 ATKINLS Sbjct: 265 ATKINLS 271>NP_008985 Length = 699 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ATKINLS 9 ATKINLS Sbjct: 270 ATKINLS 276>NP_065867 Length = 1029 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ATKINLS 9 ATKINLS Sbjct: 260 ATKINLS 266>NP_001116291 Length = 1028 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ATKINLS 9 ATKINLS Sbjct: 260 ATKINLS 266>XP_005271926 Length = 702 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ATKINLS 9 ATKINLS Sbjct: 270 ATKINLS 276>XP_006714589 Length = 724 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ATKINLS 9 ATKINLS Sbjct: 270 ATKINLS 276>XP_005271925 Length = 726 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ATKINLS 9 ATKINLS Sbjct: 270 ATKINLS 276>XP_005246008 Length = 984 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ATKINLS 9 ATKINLS Sbjct: 260 ATKINLS 266>XP_005246007 Length = 985 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 ATKINLS 9 ATKINLS Sbjct: 260 ATKINLS 266>NP_036562 Length = 307 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VATKINLS 9 ++TKINLS Sbjct: 132 LSTKINLS 139>NP_065944 Length = 1701 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VATKIN 7 VATKIN Sbjct: 901 VATKIN 906>NP_149053 Length = 371 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVA +IN+S Sbjct: 63 LVAPEINIS 71>NP_997297 Length = 1318 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LVATKINLS 9 LVAT +N+S Sbjct: 813 LVATFLNIS 821Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.127 0.296 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 258,341 Number of extensions: 270 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |