Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004060 16 5631 NP_067586 16 5631 XP_006723067 16 5631 XP_005258557 16 5631 XP_005258556 16 5631 NP_001538 15 9605>NP_004060 Length = 142 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VAKQLLML 9 V KQLLML Sbjct: 131 VLKQLLML 138>NP_067586 Length = 104 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VAKQLLML 9 V KQLLML Sbjct: 93 VLKQLLML 100>XP_006723067 Length = 144 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VAKQLLML 9 V KQLLML Sbjct: 133 VLKQLLML 140>XP_005258557 Length = 156 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VAKQLLML 9 V KQLLML Sbjct: 145 VLKQLLML 152>XP_005258556 Length = 158 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VAKQLLML 9 V KQLLML Sbjct: 147 VLKQLLML 154>NP_001538 Length = 472 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VAKQLLML 9 VAKQLL L Sbjct: 368 VAKQLLHL 375Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.341 0.149 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 240,403 Number of extensions: 144 Number of successful extensions: 6 Number of sequences better than 10000.0: 6 Number of HSP's gapped: 6 Number of HSP's successfully gapped: 6 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |