Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001166953 16 5631 NP_057386 16 5631 XP_005265259 16 5631 NP_054831 15 9605 NP_001028732 15 9605 NP_001269832 15 9605 NP_001269831 15 9605 NP_570722 15 9605 NP_001028731 15 9605 XP_005251106 15 9605 XP_006716688 15 9605 XP_006716687 15 9605>NP_001166953 Length = 441 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LTTKTAIFS 9 +TTK IFS Sbjct: 330 ITTKNEIFS 338>NP_057386 Length = 442 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LTTKTAIFS 9 +TTK IFS Sbjct: 331 ITTKNEIFS 339>XP_005265259 Length = 379 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LTTKTAIFS 9 +TTK IFS Sbjct: 268 ITTKNEIFS 276>NP_054831 Length = 1294 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTTKTAIF 8 LTTKT+++ Sbjct: 913 LTTKTSLW 920>NP_001028732 Length = 381 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TKTAIF 8 TKTA+F Sbjct: 13 TKTAVF 18>NP_001269832 Length = 1287 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTTKTAIF 8 LTTKT+++ Sbjct: 906 LTTKTSLW 913>NP_001269831 Length = 1285 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTTKTAIF 8 LTTKT+++ Sbjct: 904 LTTKTSLW 911>NP_570722 Length = 420 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TKTAIF 8 TKTA+F Sbjct: 13 TKTAVF 18>NP_001028731 Length = 376 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TKTAIF 8 TKTA+F Sbjct: 13 TKTAVF 18>XP_005251106 Length = 1281 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTTKTAIF 8 LTTKT+++ Sbjct: 900 LTTKTSLW 907>XP_006716688 Length = 1294 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTTKTAIF 8 LTTKT+++ Sbjct: 913 LTTKTSLW 920>XP_006716687 Length = 1294 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTTKTAIF 8 LTTKT+++ Sbjct: 913 LTTKTSLW 920Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.123 0.304 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 278,316 Number of extensions: 301 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |