Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001013433 19 665 NP_060785 19 665 NP_361014 19 665 NP_001257903 17 4312 NP_001307 17 4312 XP_006721269 17 4312 NP_115642 16 5631 NP_005086 16 5631 XP_005259360 16 5631 XP_005271388 16 5631 XP_006711098 16 5631 XP_006711097 16 5631 XP_005271387 16 5631 XP_005271385 16 5631 NP_001123483 16 5631 NP_113639 16 5631 NP_001073936 15 9605 NP_071750 15 9605 NP_945314 15 9605 XP_005256148 15 9605 XP_006721307 15 9605 XP_005256144 15 9605 XP_005256143 15 9605 XP_005256142 15 9605>NP_001013433 Length = 589 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LTSGMELK 8 LTSGMELK Sbjct: 465 LTSGMELK 472>NP_060785 Length = 627 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LTSGMELK 8 LTSGMELK Sbjct: 503 LTSGMELK 510>NP_361014 Length = 707 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LTSGMELK 8 LTSGMELK Sbjct: 583 LTSGMELK 590>NP_001257903 Length = 5121 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LTSGMELKY 9 +TSGME+ + Sbjct: 4581 ITSGMEVSF 4589>NP_001307 Length = 971 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LTSGMELKY 9 +T+G E+KY Sbjct: 302 VTTGQEVKY 310>XP_006721269 Length = 5138 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LTSGMELKY 9 +TSGME+ + Sbjct: 4598 ITSGMEVSF 4606>NP_115642 Length = 1984 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LTSGMELKY 9 L SG+ LKY Sbjct: 1110 LASGLVLKY 1118>NP_005086 Length = 1548 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SGMELKY 9 SGM LKY Sbjct: 1201 SGMTLKY 1207>XP_005259360 Length = 281 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LTSGMEL 7 LTSG+EL Sbjct: 52 LTSGLEL 58>XP_005271388 Length = 1224 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SGMELKY 9 SGM LKY Sbjct: 877 SGMTLKY 883>XP_006711098 Length = 1516 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SGMELKY 9 SGM LKY Sbjct: 1169 SGMTLKY 1175>XP_006711097 Length = 1542 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SGMELKY 9 SGM LKY Sbjct: 1195 SGMTLKY 1201>XP_005271387 Length = 1545 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SGMELKY 9 SGM LKY Sbjct: 1198 SGMTLKY 1204>XP_005271385 Length = 1551 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SGMELKY 9 SGM LKY Sbjct: 1204 SGMTLKY 1210>NP_001123483 Length = 249 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LTSGMEL 7 LTSG+EL Sbjct: 20 LTSGLEL 26>NP_113639 Length = 267 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LTSGMEL 7 LTSG+EL Sbjct: 38 LTSGLEL 44>NP_001073936 Length = 1848 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 TSGMELKY 9 ++GM+L+Y Sbjct: 1707 STGMQLRY 1714>NP_071750 Length = 486 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LTSGMEL 7 LTSG EL Sbjct: 439 LTSGQEL 445>NP_945314 Length = 1386 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TSGMELKY 9 T G+EL+Y Sbjct: 273 TIGLELEY 280>XP_005256148 Length = 278 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LTSGMEL 7 LTSG EL Sbjct: 231 LTSGQEL 237>XP_006721307 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LTSGMEL 7 LTSG EL Sbjct: 323 LTSGQEL 329>XP_005256144 Length = 486 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LTSGMEL 7 LTSG EL Sbjct: 439 LTSGQEL 445>XP_005256143 Length = 486 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LTSGMEL 7 LTSG EL Sbjct: 439 LTSGQEL 445>XP_005256142 Length = 486 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LTSGMEL 7 LTSG EL Sbjct: 439 LTSGQEL 445Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.131 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 518,677 Number of extensions: 819 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |