Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_776173 17 4312 XP_005276340 17 4312 XP_006719419 17 4312 XP_006719416 17 4312 XP_006719415 17 4312 XP_006719414 17 4312 XP_006719412 17 4312 XP_006719411 17 4312 XP_005249981 17 4312 NP_001191746 16 5631 NP_116217 16 5631 NP_689688 16 5631 XP_006723092 16 5631 NP_060145 16 7355 NP_001191385 16 7355 NP_001165447 16 7355 NP_004710 16 7355 XP_006719755 16 7355 XP_005269287 16 7355 XP_006714950 16 7355 NP_066986 16 7355 NP_001007189 15 9605 NP_001229825 15 9605 NP_001229826 15 9605 NP_055477 15 9605 NP_001129501 15 9605 NP_001273206 15 9605 NP_001273207 15 9605 NP_001273208 15 9605 NP_006313 15 9605 XP_005261924 15 9605 XP_006724450 15 9605 XP_006724449 15 9605 XP_005261923 15 9605 XP_006724448 15 9605 XP_006724447 15 9605 XP_005261922 15 9605 XP_005261921 15 9605 XP_005261920 15 9605 XP_005261919 15 9605 XP_005268350 15 9605>NP_776173 Length = 758 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SYSRKSAQ 9 +YSRKSA+ Sbjct: 676 TYSRKSAK 683>XP_005276340 Length = 158 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SYSRKSAQ 9 +YSRKSA+ Sbjct: 86 TYSRKSAK 93>XP_006719419 Length = 443 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SYSRKSAQ 9 +YSRKSA+ Sbjct: 361 TYSRKSAK 368>XP_006719416 Length = 615 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SYSRKSAQ 9 +YSRKSA+ Sbjct: 533 TYSRKSAK 540>XP_006719415 Length = 615 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SYSRKSAQ 9 +YSRKSA+ Sbjct: 533 TYSRKSAK 540>XP_006719414 Length = 708 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SYSRKSAQ 9 +YSRKSA+ Sbjct: 626 TYSRKSAK 633>XP_006719412 Length = 724 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SYSRKSAQ 9 +YSRKSA+ Sbjct: 676 TYSRKSAK 683>XP_006719411 Length = 738 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SYSRKSAQ 9 +YSRKSA+ Sbjct: 656 TYSRKSAK 663>XP_005249981 Length = 158 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SYSRKSAQ 9 +YSRKSA+ Sbjct: 86 TYSRKSAK 93>NP_001191746 Length = 574 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 SYSRKS+ Sbjct: 275 SYSRKSS 281>NP_116217 Length = 575 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 SYSRKS+ Sbjct: 276 SYSRKSS 282>NP_689688 Length = 575 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 SYSRKS+ Sbjct: 276 SYSRKSS 282>XP_006723092 Length = 574 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 SYSRKS+ Sbjct: 275 SYSRKSS 281>NP_060145 Length = 1310 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSYSRKSA 8 LSY+ KSA Sbjct: 191 LSYNNKSA 198>NP_001191385 Length = 714 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 381 SFSRKSA 387>NP_001165447 Length = 1310 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSYSRKSA 8 LSY+ KSA Sbjct: 191 LSYNNKSA 198>NP_004710 Length = 1463 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SYSRKSAQ 9 SY RKS Q Sbjct: 1122 SYKRKSEQ 1129>XP_006719755 Length = 1418 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SYSRKSAQ 9 SY RKS Q Sbjct: 1077 SYKRKSEQ 1084>XP_005269287 Length = 1527 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SYSRKSAQ 9 SY RKS Q Sbjct: 1186 SYKRKSEQ 1193>XP_006714950 Length = 1304 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSYSRKSA 8 LSY+ KSA Sbjct: 191 LSYNNKSA 198>NP_066986 Length = 714 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 381 SFSRKSA 387>NP_001007189 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>NP_001229825 Length = 1603 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>NP_001229826 Length = 1503 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>NP_055477 Length = 1572 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>NP_001129501 Length = 1594 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>NP_001273206 Length = 897 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSYSRKSAQ 9 LSY +SAQ Sbjct: 131 LSYQDRSAQ 139>NP_001273207 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSYSRKSAQ 9 LSY +SAQ Sbjct: 141 LSYQDRSAQ 149>NP_001273208 Length = 439 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSYSRKSAQ 9 LSY +SAQ Sbjct: 141 LSYQDRSAQ 149>NP_006313 Length = 907 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSYSRKSAQ 9 LSY +SAQ Sbjct: 141 LSYQDRSAQ 149>XP_005261924 Length = 1176 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>XP_006724450 Length = 1187 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>XP_006724449 Length = 1198 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>XP_005261923 Length = 1307 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>XP_006724448 Length = 1490 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 376 SHSRKSA 382>XP_006724447 Length = 1516 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>XP_005261922 Length = 1525 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>XP_005261921 Length = 1581 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>XP_005261920 Length = 1594 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>XP_005261919 Length = 1603 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SYSRKSA 8 S+SRKSA Sbjct: 489 SHSRKSA 495>XP_005268350 Length = 818 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSYSRKSAQ 9 LSY +SAQ Sbjct: 141 LSYQDRSAQ 149Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.301 0.107 0.249 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 422,772 Number of extensions: 353 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |