Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_361014 19 665 NP_001243998 19 665 NP_001008563 17 4312 NP_006667 17 4312 NP_001103773 17 4312 XP_005251723 17 4312 XP_006717001 17 4312 XP_005251722 17 4312 XP_006713297 17 4312 XP_006713296 17 4312 XP_006713295 17 4312 XP_005265345 17 4312 XP_006713294 17 4312 XP_006713293 17 4312 XP_006713292 17 4312 XP_006713291 17 4312 XP_006713290 17 4312 XP_006713289 17 4312 XP_006713286 17 4312 XP_005265332 17 4312 XP_006713285 17 4312 XP_006713284 17 4312 XP_006713283 17 4312 NP_056139 16 5631 NP_001185731 16 5631 NP_001185730 16 5631 NP_003751 16 5631 XP_006716126 16 5631 XP_005250566 16 5631 XP_005250565 16 5631 NP_001120832 16 5631 NP_001120831 16 5631 NP_001120829 16 5631 NP_001120830 16 5631 NP_065165 16 5631 NP_002838 16 7355 XP_006716138 16 7355 NP_570857 16 7355 NP_570858 16 7355 NP_001073893 15 9605 NP_775859 15 9605 NP_997253 15 9605 NP_002636 15 9605 XP_006721547 15 9605 XP_005256611 15 9605 XP_005256609 15 9605 XP_005256607 15 9605 XP_005256608 15 9605 XP_006721546 15 9605 XP_005256606 15 9605 XP_005253037 15 9605 XP_005253036 15 9605 XP_005253035 15 9605 XP_005253034 15 9605 XP_005248275 15 9605 XP_003846701 15 9605>NP_361014 Length = 707 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSVGSKRRQ 9 LSVGSKRR+ Sbjct: 6 LSVGSKRRR 14>NP_001243998 Length = 176 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSVGSKRRQ 9 LSVGSKRR+ Sbjct: 6 LSVGSKRRR 14>NP_001008563 Length = 914 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSVGSKRRQ 9 LS GS+RR+ Sbjct: 429 LSAGSRRRK 437>NP_006667 Length = 914 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSVGSKRRQ 9 LS GS+RR+ Sbjct: 429 LSAGSRRRK 437>NP_001103773 Length = 914 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSVGSKRRQ 9 LS GS+RR+ Sbjct: 429 LSAGSRRRK 437>XP_005251723 Length = 675 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSVGSKRRQ 9 LS GS+RR+ Sbjct: 190 LSAGSRRRK 198>XP_006717001 Length = 914 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSVGSKRRQ 9 LS GS+RR+ Sbjct: 429 LSAGSRRRK 437>XP_005251722 Length = 914 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSVGSKRRQ 9 LS GS+RR+ Sbjct: 429 LSAGSRRRK 437>XP_006713297 Length = 1600 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_006713296 Length = 1615 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_006713295 Length = 1620 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_005265345 Length = 1627 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_006713294 Length = 1652 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_006713293 Length = 1667 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_006713292 Length = 1670 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_006713291 Length = 1682 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_006713290 Length = 1690 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_006713289 Length = 1697 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_006713286 Length = 1707 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_005265332 Length = 1722 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_006713285 Length = 1722 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_006713284 Length = 1722 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>XP_006713283 Length = 1722 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVGSKRRQ 9 S+GSKRR+ Sbjct: 18 SMGSKRRR 25>NP_056139 Length = 456 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 GSKRRQ 9 GSKRRQ Sbjct: 34 GSKRRQ 39>NP_001185731 Length = 1591 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSVGSKRRQ 9 L+VGS+R Q Sbjct: 703 LNVGSRRSQ 711>NP_001185730 Length = 1621 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSVGSKRRQ 9 L+VGS+R Q Sbjct: 733 LNVGSRRSQ 741>NP_003751 Length = 1585 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSVGSKRRQ 9 L+VGS+R Q Sbjct: 697 LNVGSRRSQ 705>XP_006716126 Length = 708 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 162 LSTGGKRRR 170>XP_005250566 Length = 751 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 162 LSTGGKRRR 170>XP_005250565 Length = 751 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 162 LSTGGKRRR 170>NP_001120832 Length = 352 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 158 LSTGGKRRR 166>NP_001120831 Length = 356 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 162 LSTGGKRRR 170>NP_001120829 Length = 751 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 162 LSTGGKRRR 170>NP_001120830 Length = 747 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 158 LSTGGKRRR 166>NP_065165 Length = 747 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 158 LSTGGKRRR 166>NP_002838 Length = 1015 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SVGSKRR 8 SVGS+RR Sbjct: 132 SVGSERR 138>XP_006716138 Length = 858 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SVGSKRR 8 SVGS+RR Sbjct: 132 SVGSERR 138>NP_570857 Length = 998 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SVGSKRR 8 SVGS+RR Sbjct: 115 SVGSERR 121>NP_570858 Length = 986 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SVGSKRR 8 SVGS+RR Sbjct: 132 SVGSERR 138>NP_001073893 Length = 1682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 223 LSPGGKRRR 231>NP_775859 Length = 1326 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LSVGSKR 7 LSVG KR Sbjct: 310 LSVGDKR 316>NP_997253 Length = 609 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LSVGSKRRQ 9 LSVG+K+++ Sbjct: 30 LSVGAKQKK 38>NP_002636 Length = 1686 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LSVGSKR 7 LSVG KR Sbjct: 1035 LSVGGKR 1041>XP_006721547 Length = 1638 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 223 LSPGGKRRR 231>XP_005256611 Length = 1643 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 223 LSPGGKRRR 231>XP_005256609 Length = 1682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 223 LSPGGKRRR 231>XP_005256607 Length = 1682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 223 LSPGGKRRR 231>XP_005256608 Length = 1682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 223 LSPGGKRRR 231>XP_006721546 Length = 1682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 223 LSPGGKRRR 231>XP_005256606 Length = 1682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LS G KRR+ Sbjct: 223 LSPGGKRRR 231>XP_005253037 Length = 1306 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LSVGSKR 7 LSVG KR Sbjct: 655 LSVGGKR 661>XP_005253036 Length = 1686 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LSVGSKR 7 LSVG KR Sbjct: 1035 LSVGGKR 1041>XP_005253035 Length = 1686 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LSVGSKR 7 LSVG KR Sbjct: 1035 LSVGGKR 1041>XP_005253034 Length = 1686 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LSVGSKR 7 LSVG KR Sbjct: 1035 LSVGGKR 1041>XP_005248275 Length = 136 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VGSKRRQ 9 VG+KR+Q Sbjct: 127 VGNKRKQ 133>XP_003846701 Length = 143 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSVGSKRRQ 9 LSVG K+ Q Sbjct: 132 LSVGKKQAQ 140Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.126 0.311 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 586,970 Number of extensions: 951 Number of successful extensions: 56 Number of sequences better than 10000.0: 56 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 56 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |