Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 18 1135 XP_006715292 18 1135 XP_006726157 16 5631 XP_005275612 16 5631 XP_005275610 16 5631 XP_006726064 16 5631 XP_005275460 16 5631 XP_006715157 16 5631 XP_005249149 16 5631 NP_002254 16 5631 NP_001129673 16 7355 NP_060661 16 7355 NP_001129674 16 7355 NP_078986 16 7355 NP_001273700 16 7355 NP_001183959 16 7355 NP_115593 16 7355 NP_078944 16 7355 NP_942592 16 7355 NP_060217 16 7355 NP_065741 16 7355 XP_005259322 16 7355 XP_005258982 16 7355 XP_005266498 16 7355 XP_005265730 16 7355 XP_005265729 16 7355 XP_005265728 16 7355 XP_005265724 16 7355 NP_001099040 16 7355 NP_001116 16 7355 NP_005583 15 9605 NP_001159752 15 9605 NP_001159753 15 9605 NP_937784 15 9605 NP_061870 15 9605 NP_114107 15 9605 NP_653213 15 9605 XP_006722447 15 9605 XP_005252053 15 9605 XP_005252052 15 9605 XP_005252051 15 9605>NP_115927 Length = 1321 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LSTADGLVE 9 LSTADG VE Sbjct: 462 LSTADGRVE 470>XP_006715292 Length = 759 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LSTADGLVE 9 LSTADG VE Sbjct: 457 LSTADGRVE 465>XP_006726157 Length = 414 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSTADGLVE 9 LST +GLV+ Sbjct: 220 LSTQEGLVQ 228>XP_005275612 Length = 633 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSTADGLVE 9 LST +GLV+ Sbjct: 179 LSTQEGLVQ 187>XP_005275610 Length = 674 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSTADGLVE 9 LST +GLV+ Sbjct: 220 LSTQEGLVQ 228>XP_006726064 Length = 414 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSTADGLVE 9 LST +GLV+ Sbjct: 220 LSTQEGLVQ 228>XP_005275460 Length = 674 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSTADGLVE 9 LST +GLV+ Sbjct: 220 LSTQEGLVQ 228>XP_006715157 Length = 414 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSTADGLVE 9 LST +GLV+ Sbjct: 220 LSTQEGLVQ 228>XP_005249149 Length = 674 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSTADGLVE 9 LST +GLV+ Sbjct: 220 LSTQEGLVQ 228>NP_002254 Length = 673 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSTADGLVE 9 LST +GLV+ Sbjct: 220 LSTQEGLVQ 228>NP_001129673 Length = 205 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LSTADGLV 8 LST++GL+ Sbjct: 158 LSTSEGLI 165>NP_060661 Length = 531 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSTADGLV 8 LST DG+V Sbjct: 89 LSTEDGVV 96>NP_001129674 Length = 135 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LSTADGLV 8 LST++GL+ Sbjct: 88 LSTSEGLI 95>NP_078986 Length = 221 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LSTADGLV 8 LST++GL+ Sbjct: 174 LSTSEGLI 181>NP_001273700 Length = 2490 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LSTADG 6 LSTADG Sbjct: 74 LSTADG 79>NP_001183959 Length = 581 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LSTADG 6 LSTADG Sbjct: 158 LSTADG 163>NP_115593 Length = 2603 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LSTADG 6 LSTADG Sbjct: 187 LSTADG 192>NP_078944 Length = 627 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LSTADG 6 LSTADG Sbjct: 158 LSTADG 163>NP_942592 Length = 2352 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LSTADG 6 LSTADG Sbjct: 187 LSTADG 192>NP_060217 Length = 2542 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LSTADG 6 LSTADG Sbjct: 158 LSTADG 163>NP_065741 Length = 2617 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LSTADG 6 LSTADG Sbjct: 158 LSTADG 163>XP_005259322 Length = 151 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LSTADGLV 8 LST++GL+ Sbjct: 104 LSTSEGLI 111>XP_005258982 Length = 201 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSTADGLV 8 L TADG+V Sbjct: 122 LLTADGMV 129>XP_005266498 Length = 531 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSTADGLV 8 LST DG+V Sbjct: 89 LSTEDGVV 96>XP_005265730 Length = 1480 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LSTADG 6 LSTADG Sbjct: 187 LSTADG 192>XP_005265729 Length = 1543 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LSTADG 6 LSTADG Sbjct: 187 LSTADG 192>XP_005265728 Length = 2351 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LSTADG 6 LSTADG Sbjct: 187 LSTADG 192>XP_005265724 Length = 2602 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LSTADG 6 LSTADG Sbjct: 187 LSTADG 192>NP_001099040 Length = 375 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSTADGLV 8 L TADG+V Sbjct: 296 LLTADGMV 303>NP_001116 Length = 357 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSTADGLVE 9 L+TA+ LVE Sbjct: 61 LATAEALVE 69>NP_005583 Length = 869 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LSTADGLVE 9 L T D LVE Sbjct: 34 LETVDALVE 42>NP_001159752 Length = 783 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LSTADGLVE 9 L T D LVE Sbjct: 34 LETVDALVE 42>NP_001159753 Length = 773 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LSTADGLVE 9 L T D LVE Sbjct: 34 LETVDALVE 42>NP_937784 Length = 914 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 LSTADGLVE 9 ++TA+GL++ Sbjct: 550 MATAEGLIK 558>NP_061870 Length = 87 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 TADGLVE 9 T DGL+E Sbjct: 31 TMDGLIE 37>NP_114107 Length = 87 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 TADGLVE 9 T DGL+E Sbjct: 31 TMDGLIE 37>NP_653213 Length = 2211 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ADGLVE 9 ADGL+E Sbjct: 403 ADGLIE 408>XP_006722447 Length = 1933 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 ADGLVE 9 ADGL+E Sbjct: 125 ADGLIE 130>XP_005252053 Length = 861 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LSTADGLVE 9 L T D LVE Sbjct: 34 LETVDALVE 42>XP_005252052 Length = 871 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LSTADGLVE 9 L T D LVE Sbjct: 34 LETVDALVE 42>XP_005252051 Length = 879 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LSTADGLVE 9 L T D LVE Sbjct: 34 LETVDALVE 42Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.304 0.127 0.317 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 474,378 Number of extensions: 449 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |