Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 19 869 XP_005262424 19 869 NP_004710 17 2528 XP_006719755 17 2528 XP_005269287 17 2528 NP_078966 16 5631 NP_055178 16 5631 NP_001264984 16 5631 XP_005266395 16 5631 NP_857597 16 5631 XP_005275705 16 7355 XP_006725335 16 7355 XP_006725334 16 7355 XP_006725333 16 7355 XP_005275704 16 7355 XP_006725331 16 7355 XP_006725330 16 7355 XP_006725329 16 7355 XP_006725328 16 7355 NP_055914 15 9605 NP_037450 15 9605 NP_005325 15 9605 NP_060500 15 9605 NP_001229437 15 9605 NP_542164 15 9605 NP_001164639 15 9605 NP_001164638 15 9605 NP_003632 15 9605 XP_005274721 15 9605 XP_006724879 15 9605 XP_006724878 15 9605 XP_006723004 15 9605 XP_006722446 15 9605 XP_006722445 15 9605 XP_006722444 15 9605 XP_006722443 15 9605 XP_006721545 15 9605 XP_006721544 15 9605 XP_006721543 15 9605 XP_006721542 15 9605 XP_006721541 15 9605 XP_006712056 15 9605 NP_001164637 15 9605>NP_722576 Length = 3080 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LSSVIPRTT 9 LSSV PRTT Sbjct: 1592 LSSVTPRTT 1600>XP_005262424 Length = 2875 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LSSVIPRTT 9 LSSV PRTT Sbjct: 1387 LSSVTPRTT 1395>NP_004710 Length = 1463 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSSVIPRT 8 +SSV+PRT Sbjct: 261 ISSVLPRT 268>XP_006719755 Length = 1418 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSSVIPRT 8 +SSV+PRT Sbjct: 216 ISSVLPRT 223>XP_005269287 Length = 1527 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSSVIPRT 8 +SSV+PRT Sbjct: 325 ISSVLPRT 332>NP_078966 Length = 14507 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSSVIPRTT 9 +SSVIP T+ Sbjct: 675 VSSVIPETS 683Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSVIPRTT 9 SSV+ RTT Sbjct: 69 SSVVGRTT 76Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 SSVIPRTT 9 ++++PRTT Sbjct: 11499 NTMVPRTT 11506>NP_055178 Length = 4579 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LSSVIPR 7 LSSV+PR Sbjct: 3218 LSSVLPR 3224>NP_001264984 Length = 4432 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LSSVIPR 7 LSSV+PR Sbjct: 3071 LSSVLPR 3077>XP_005266395 Length = 4588 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LSSVIPR 7 LSSV+PR Sbjct: 3227 LSSVLPR 3233>NP_857597 Length = 1349 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SVIPRTT 9 S IPRTT Sbjct: 995 SAIPRTT 1001>XP_005275705 Length = 390 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 +SSV PRT Sbjct: 74 VSSVTPRT 81>XP_006725335 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 +SSV PRT Sbjct: 133 VSSVTPRT 140>XP_006725334 Length = 456 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 +SSV PRT Sbjct: 140 VSSVTPRT 147>XP_006725333 Length = 478 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 +SSV PRT Sbjct: 162 VSSVTPRT 169>XP_005275704 Length = 507 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 +SSV PRT Sbjct: 191 VSSVTPRT 198>XP_006725331 Length = 804 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 +SSV PRT Sbjct: 488 VSSVTPRT 495>XP_006725330 Length = 831 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 +SSV PRT Sbjct: 546 VSSVTPRT 553>XP_006725329 Length = 833 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 +SSV PRT Sbjct: 517 VSSVTPRT 524>XP_006725328 Length = 862 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 +SSV PRT Sbjct: 546 VSSVTPRT 553>NP_055914 Length = 1202 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSSVIPRTT 9 + S+IPR+T Sbjct: 688 VESMIPRST 696>NP_037450 Length = 2229 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SSVIPR 7 SSVIPR Sbjct: 37 SSVIPR 42>NP_005325 Length = 2035 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSVIPRTT 9 +SSV P TT Sbjct: 753 ISSVSPSTT 761>NP_060500 Length = 437 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 + SVIP+T Sbjct: 350 MESVIPKT 357>NP_001229437 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 + SVIP+T Sbjct: 481 MESVIPKT 488>NP_542164 Length = 950 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 + SVIP+T Sbjct: 863 MESVIPKT 870>NP_001164639 Length = 1201 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSSVIPRTT 9 + S+IPR+T Sbjct: 687 VESMIPRST 695>NP_001164638 Length = 1241 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSSVIPRTT 9 + S+IPR+T Sbjct: 711 VESMIPRST 719>NP_003632 Length = 125 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 SSVIPRTT 9 S+++PR+T Sbjct: 16 STILPRST 23>XP_005274721 Length = 2036 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSVIPRTT 9 +SSV P TT Sbjct: 753 ISSVSPSTT 761>XP_006724879 Length = 2079 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSVIPRTT 9 +SSV P TT Sbjct: 753 ISSVSPSTT 761>XP_006724878 Length = 2080 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSVIPRTT 9 +SSV P TT Sbjct: 753 ISSVSPSTT 761>XP_006723004 Length = 6443 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 SSVIPRTT 9 ++++PRTT Sbjct: 3413 NTMVPRTT 3420>XP_006722446 Length = 889 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 + SVIP+T Sbjct: 802 MESVIPKT 809>XP_006722445 Length = 905 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 + SVIP+T Sbjct: 818 MESVIPKT 825>XP_006722444 Length = 914 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 + SVIP+T Sbjct: 827 MESVIPKT 834>XP_006722443 Length = 925 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSSVIPRT 8 + SVIP+T Sbjct: 838 MESVIPKT 845>XP_006721545 Length = 1015 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSSVIPRTT 9 + S+IPR+T Sbjct: 501 VESMIPRST 509>XP_006721544 Length = 1178 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSSVIPRTT 9 + S+IPR+T Sbjct: 664 VESMIPRST 672>XP_006721543 Length = 1195 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSSVIPRTT 9 + S+IPR+T Sbjct: 688 VESMIPRST 696>XP_006721542 Length = 1200 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSSVIPRTT 9 + S+IPR+T Sbjct: 693 VESMIPRST 701>XP_006721541 Length = 1207 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSSVIPRTT 9 + S+IPR+T Sbjct: 693 VESMIPRST 701>XP_006712056 Length = 205 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SSVIPRTT 9 +SV+PR T Sbjct: 71 TSVVPRPT 78>NP_001164637 Length = 1197 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSSVIPRTT 9 + S+IPR+T Sbjct: 690 VESMIPRST 698Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.124 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 586,076 Number of extensions: 907 Number of successful extensions: 45 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 45 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |