Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001001890 18 1935 NP_001745 18 1935 XP_005261126 18 1935 XP_005261125 18 1935 NP_776253 17 4312 NP_115524 17 4312 NP_001010909 17 4312 NP_001008487 17 4312 NP_001008485 17 4312 NP_060306 17 4312 NP_001157947 17 4312 XP_005275464 17 4312 XP_005275463 17 4312 XP_005275181 17 4312 XP_005275180 17 4312 XP_005269237 17 4312 XP_005269236 17 4312 XP_005269235 17 4312 XP_006719693 17 4312 XP_005269233 17 4312 XP_005247622 17 4312 XP_005247621 17 4312 XP_006713744 17 4312 XP_005247620 17 4312 XP_005247619 17 4312 XP_005247618 17 4312 XP_005247617 17 4312 XP_005247616 17 4312 XP_005245126 17 4312 XP_006720690 16 5631 NP_001020279 16 7355 NP_002276 16 7355 XP_006720284 16 7355 XP_005267978 16 7355 XP_005267977 16 7355 XP_005267976 16 7355 XP_005264002 16 7355 XP_005264000 16 7355 XP_006712586 16 7355 XP_005263999 16 7355 NP_001153003 16 7355 NP_065887 16 7355 NP_065857 15 9605 NP_001019389 15 9605 NP_006209 15 9605 NP_063968 15 9605 NP_001112 15 9605 NP_058432 15 9605 XP_006726466 15 9605 XP_005267311 15 9605 XP_005267310 15 9605 XP_005267307 15 9605 XP_006720066 15 9605 XP_005269592 15 9605 XP_006717692 15 9605 XP_006717691 15 9605 XP_005269591 15 9605 XP_006717690 15 9605 XP_005269590 15 9605 XP_006717689 15 9605 XP_005269588 15 9605 XP_005269587 15 9605 XP_005269586 15 9605 XP_006713721 15 9605 XP_006712969 15 9605 XP_006710208 15 9605>NP_001001890 Length = 453 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 LSSRLSTA Sbjct: 290 LSSRLSTA 297>NP_001745 Length = 480 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 LSSRLSTA Sbjct: 317 LSSRLSTA 324>XP_005261126 Length = 416 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 LSSRLSTA Sbjct: 253 LSSRLSTA 260>XP_005261125 Length = 468 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 LSSRLSTA Sbjct: 305 LSSRLSTA 312>NP_776253 Length = 513 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 153 LASRLSTA 160>NP_115524 Length = 573 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 214 LASRLSTA 221>NP_001010909 Length = 566 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 +SSR STAT Sbjct: 188 VSSRASTAT 196>NP_001008487 Length = 461 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 94 LASRLSTA 101>NP_001008485 Length = 507 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 120 LASRLSTA 127>NP_060306 Length = 487 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 120 LASRLSTA 127>NP_001157947 Length = 370 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 3 LASRLSTA 10>XP_005275464 Length = 572 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 +SSR STAT Sbjct: 194 VSSRASTAT 202>XP_005275463 Length = 626 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 +SSR STAT Sbjct: 158 VSSRASTAT 166Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 +SSR STAT Sbjct: 218 VSSRASTAT 226>XP_005275181 Length = 572 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 +SSR STAT Sbjct: 194 VSSRASTAT 202>XP_005275180 Length = 596 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 +SSR STAT Sbjct: 158 VSSRASTAT 166Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 +SSR STAT Sbjct: 218 VSSRASTAT 226>XP_005269237 Length = 527 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 214 LASRLSTA 221>XP_005269236 Length = 573 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 214 LASRLSTA 221>XP_005269235 Length = 573 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 214 LASRLSTA 221>XP_006719693 Length = 573 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 214 LASRLSTA 221>XP_005269233 Length = 573 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 214 LASRLSTA 221>XP_005247622 Length = 481 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 94 LASRLSTA 101>XP_005247621 Length = 502 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_006713744 Length = 507 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_005247620 Length = 507 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_005247619 Length = 507 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_005247618 Length = 507 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_005247617 Length = 522 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_005247616 Length = 522 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 120 LASRLSTA 127>XP_005245126 Length = 513 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 L+SRLSTA Sbjct: 153 LASRLSTA 160>XP_006720690 Length = 1245 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLSTA 8 LSSRLS+A Sbjct: 1173 LSSRLSSA 1180>NP_001020279 Length = 1251 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLSTAT 9 SSRL+T+T Sbjct: 867 SSRLATST 874>NP_002276 Length = 1226 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLSTAT 9 SSRL+T+T Sbjct: 842 SSRLATST 849>XP_006720284 Length = 578 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 LSSRLS A+ Sbjct: 180 LSSRLSDAS 188>XP_005267978 Length = 593 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 LSSRLS A+ Sbjct: 195 LSSRLSDAS 203>XP_005267977 Length = 605 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 LSSRLS A+ Sbjct: 207 LSSRLSDAS 215>XP_005267976 Length = 606 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 LSSRLS A+ Sbjct: 208 LSSRLSDAS 216>XP_005264002 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLSTAT 9 SSRL+T+T Sbjct: 511 SSRLATST 518>XP_005264000 Length = 1226 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLSTAT 9 SSRL+T+T Sbjct: 842 SSRLATST 849>XP_006712586 Length = 1262 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLSTAT 9 SSRL+T+T Sbjct: 894 SSRLATST 901>XP_005263999 Length = 1278 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLSTAT 9 SSRL+T+T Sbjct: 894 SSRLATST 901>NP_001153003 Length = 593 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 LSSRLS A+ Sbjct: 195 LSSRLSDAS 203>NP_065887 Length = 593 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLSTAT 9 LSSRLS A+ Sbjct: 195 LSSRLSDAS 203>NP_065857 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLSTAT 9 +SRLSTA+ Sbjct: 309 TSRLSTAS 316>NP_001019389 Length = 736 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLSTAT 9 +SRLSTA+ Sbjct: 276 TSRLSTAS 283>NP_006209 Length = 1068 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSRLSTAT 9 S R+STAT Sbjct: 308 SRRISTAT 315>NP_063968 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 615 SRLSTST 621>NP_001112 Length = 674 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 615 SRLSTST 621>NP_058432 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 647 SRLSTST 653>XP_006726466 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LSSRLSTA 8 LSSRLS A Sbjct: 1002 LSSRLSEA 1009>XP_005267311 Length = 755 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLSTAT 9 +SRLSTA+ Sbjct: 276 TSRLSTAS 283>XP_005267310 Length = 769 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLSTAT 9 +SRLSTA+ Sbjct: 276 TSRLSTAS 283>XP_005267307 Length = 788 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLSTAT 9 +SRLSTA+ Sbjct: 309 TSRLSTAS 316>XP_006720066 Length = 802 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLSTAT 9 +SRLSTA+ Sbjct: 309 TSRLSTAS 316>XP_005269592 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 569 SRLSTST 575>XP_006717692 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 569 SRLSTST 575>XP_006717691 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 647 SRLSTST 653>XP_005269591 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 647 SRLSTST 653>XP_006717690 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 647 SRLSTST 653>XP_005269590 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 647 SRLSTST 653>XP_006717689 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 647 SRLSTST 653>XP_005269588 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 647 SRLSTST 653>XP_005269587 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 647 SRLSTST 653>XP_005269586 Length = 706 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRLSTAT 9 SRLST+T Sbjct: 647 SRLSTST 653>XP_006713721 Length = 1068 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSRLSTAT 9 S R+STAT Sbjct: 308 SRRISTAT 315>XP_006712969 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LSSRLSTA 8 LSSRLS A Sbjct: 1002 LSSRLSEA 1009>XP_006710208 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LSSRLSTA 8 LSSRLS A Sbjct: 358 LSSRLSEA 365Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.299 0.103 0.222 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 201,268 Number of extensions: 271 Number of successful extensions: 68 Number of sequences better than 10000.0: 66 Number of HSP's gapped: 68 Number of HSP's successfully gapped: 68 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |