Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_036462 18 1135 NP_001243397 18 1135 XP_005269721 18 1135 NP_005856 17 3301 NP_443100 16 5631 NP_003175 16 5631 NP_001193594 16 5631 XP_006716684 16 5631 XP_006711694 16 5631 XP_005245671 16 5631 NP_001006658 16 7355 NP_065830 16 7355 NP_001156787 16 7355 XP_005272107 16 7355 XP_005272105 16 7355 NP_663160 15 9605 NP_663162 15 9605 NP_056365 15 9605 NP_663161 15 9605 NP_002509 15 9605 XP_006715747 15 9605 XP_006715746 15 9605 XP_006715745 15 9605 XP_006715744 15 9605 XP_005249755 15 9605 XP_005264018 15 9605 XP_005264017 15 9605 XP_005264016 15 9605 XP_005264015 15 9605 XP_005264014 15 9605 XP_005264012 15 9605 XP_005264011 15 9605 XP_005264010 15 9605>NP_036462 Length = 2073 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SSRLAVTD 9 SSRLAVTD Sbjct: 396 SSRLAVTD 403>NP_001243397 Length = 1890 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SSRLAVTD 9 SSRLAVTD Sbjct: 396 SSRLAVTD 403>XP_005269721 Length = 2073 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 SSRLAVTD 9 SSRLAVTD Sbjct: 396 SSRLAVTD 403>NP_005856 Length = 514 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSRLAVTD 9 LSSRLA+ D Sbjct: 151 LSSRLALAD 159>NP_443100 Length = 613 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLAVT 8 LSS+LAVT Sbjct: 301 LSSQLAVT 308>NP_003175 Length = 1199 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLAVTD 9 +SRLA+TD Sbjct: 676 ASRLALTD 683>NP_001193594 Length = 613 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLAVT 8 LSS+LAVT Sbjct: 301 LSSQLAVT 308>XP_006716684 Length = 1251 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSRLAVTD 9 +SRLA+TD Sbjct: 676 ASRLALTD 683>XP_006711694 Length = 596 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLAVT 8 LSS+LAVT Sbjct: 284 LSSQLAVT 291>XP_005245671 Length = 613 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSRLAVT 8 LSS+LAVT Sbjct: 301 LSSQLAVT 308>NP_001006658 Length = 1181 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSRLAVTD 9 SSRLA+ D Sbjct: 555 SSRLAIID 562>NP_065830 Length = 1170 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSRLAVTD 9 SSRLA+ D Sbjct: 544 SSRLAIID 551>NP_001156787 Length = 701 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSSRLAVTD 9 LSSR VTD Sbjct: 367 LSSRQQVTD 375>XP_005272107 Length = 505 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSSRLAVTD 9 LSSR VTD Sbjct: 367 LSSRQQVTD 375>XP_005272105 Length = 712 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSSRLAVTD 9 LSSR VTD Sbjct: 367 LSSRQQVTD 375>NP_663160 Length = 856 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRLAVTD 9 SRL++TD Sbjct: 409 SRLSITD 415>NP_663162 Length = 820 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRLAVTD 9 SRL++TD Sbjct: 373 SRLSITD 379>NP_056365 Length = 887 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRLAVTD 9 SRL++TD Sbjct: 440 SRLSITD 446>NP_663161 Length = 851 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRLAVTD 9 SRL++TD Sbjct: 404 SRLSITD 410>NP_002509 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSRLAVTD 9 LSS + VTD Sbjct: 145 LSSHMLVTD 153>XP_006715747 Length = 534 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRLAVTD 9 SRL++TD Sbjct: 87 SRLSITD 93>XP_006715746 Length = 820 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRLAVTD 9 SRL++TD Sbjct: 373 SRLSITD 379>XP_006715745 Length = 851 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRLAVTD 9 SRL++TD Sbjct: 404 SRLSITD 410>XP_006715744 Length = 856 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRLAVTD 9 SRL++TD Sbjct: 409 SRLSITD 415>XP_005249755 Length = 887 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRLAVTD 9 SRL++TD Sbjct: 440 SRLSITD 446>XP_005264018 Length = 700 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSRLAVTD 9 LSS + VTD Sbjct: 21 LSSHMLVTD 29>XP_005264017 Length = 786 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSRLAVTD 9 LSS + VTD Sbjct: 210 LSSHMLVTD 218>XP_005264016 Length = 835 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSRLAVTD 9 LSS + VTD Sbjct: 210 LSSHMLVTD 218>XP_005264015 Length = 838 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSRLAVTD 9 LSS + VTD Sbjct: 159 LSSHMLVTD 167>XP_005264014 Length = 851 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSRLAVTD 9 LSS + VTD Sbjct: 210 LSSHMLVTD 218>XP_005264012 Length = 854 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSRLAVTD 9 LSS + VTD Sbjct: 175 LSSHMLVTD 183>XP_005264011 Length = 888 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSRLAVTD 9 LSS + VTD Sbjct: 210 LSSHMLVTD 218>XP_005264010 Length = 889 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSSRLAVTD 9 LSS + VTD Sbjct: 210 LSSHMLVTD 218Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.122 0.286 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 232,903 Number of extensions: 220 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |