Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055989 18 1935 NP_004506 17 2528 NP_001254738 17 2528 NP_057191 17 4312 XP_006714540 17 4312 NP_064716 16 5631 NP_005679 16 5631 NP_001018881 16 5631 NP_066015 16 5631 XP_005258381 16 5631 XP_006722580 16 5631 XP_006722579 16 5631 XP_005258380 16 5631 XP_005248794 16 5631 XP_005248793 16 5631 XP_005248792 16 5631 XP_005247116 16 5631 XP_005247115 16 5631 NP_001229854 16 7355 NP_055673 16 7355 NP_055221 16 7355 NP_001001852 16 7355 NP_001123564 16 7355 NP_001123563 16 7355 NP_001123562 16 7355 NP_115997 16 7355 NP_112584 16 7355 XP_006724404 16 7355 XP_006724403 16 7355 XP_005261845 16 7355 XP_005261844 16 7355 XP_005261843 16 7355 XP_005256867 16 7355 XP_006721647 16 7355 XP_006721646 16 7355 XP_005245743 16 7355 XP_005245742 16 7355 XP_006711757 16 7355 XP_005245741 16 7355 NP_997465 15 9605>NP_055989 Length = 939 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSSLAAVRH 9 L SLAA+RH Sbjct: 766 LESLAALRH 774>NP_004506 Length = 390 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSLAAVRH 9 S+LAA+RH Sbjct: 200 SALAAIRH 207>NP_001254738 Length = 352 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SSLAAVRH 9 S+LAA+RH Sbjct: 162 SALAAIRH 169>NP_057191 Length = 1074 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSSLAAVRH 9 L +LAA+RH Sbjct: 900 LDALAALRH 908>XP_006714540 Length = 1030 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSSLAAVRH 9 L +LAA+RH Sbjct: 856 LDALAALRH 864>NP_064716 Length = 578 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSSLAAVRH 9 LS LAAV H Sbjct: 528 LSHLAAVAH 536>NP_005679 Length = 1437 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSSLAAVRH 9 LSSLA V H Sbjct: 115 LSSLARVAH 123>NP_001018881 Length = 208 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSSLAAVRH 9 LSSLA V H Sbjct: 115 LSSLARVAH 123>NP_066015 Length = 2579 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLAAVRH 9 SLA+VRH Sbjct: 2315 SLASVRH 2321>XP_005258381 Length = 2224 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLAAVRH 9 SLA+VRH Sbjct: 1960 SLASVRH 1966>XP_006722580 Length = 2532 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLAAVRH 9 SLA+VRH Sbjct: 2268 SLASVRH 2274>XP_006722579 Length = 2544 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLAAVRH 9 SLA+VRH Sbjct: 2315 SLASVRH 2321>XP_005258380 Length = 2578 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLAAVRH 9 SLA+VRH Sbjct: 2314 SLASVRH 2320>XP_005248794 Length = 403 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSSLAAVRH 9 LS LAAV H Sbjct: 353 LSHLAAVAH 361>XP_005248793 Length = 403 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSSLAAVRH 9 LS LAAV H Sbjct: 353 LSHLAAVAH 361>XP_005248792 Length = 403 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSSLAAVRH 9 LS LAAV H Sbjct: 353 LSHLAAVAH 361>XP_005247116 Length = 1437 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSSLAAVRH 9 LSSLA V H Sbjct: 115 LSSLARVAH 123>XP_005247115 Length = 1437 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSSLAAVRH 9 LSSLA V H Sbjct: 115 LSSLARVAH 123>NP_001229854 Length = 631 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSLAAVRH 9 SSLAA+ H Sbjct: 127 SSLAAILH 134>NP_055673 Length = 709 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSLAAVRH 9 SSLAA+ H Sbjct: 205 SSLAAILH 212>NP_055221 Length = 557 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSSLAAVR 8 LSSLAAV+ Sbjct: 34 LSSLAAVQ 41>NP_001001852 Length = 326 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LAAVRH 9 LAAVRH Sbjct: 155 LAAVRH 160>NP_001123564 Length = 457 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSSLAAVR 8 LSSL+A+R Sbjct: 332 LSSLSAIR 339>NP_001123563 Length = 457 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSSLAAVR 8 LSSL+A+R Sbjct: 332 LSSLSAIR 339>NP_001123562 Length = 523 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSSLAAVR 8 LSSL+A+R Sbjct: 332 LSSLSAIR 339>NP_115997 Length = 2567 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSLAAVR 8 SSLAAVR Sbjct: 1166 SSLAAVR 1172>NP_112584 Length = 523 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSSLAAVR 8 LSSL+A+R Sbjct: 332 LSSLSAIR 339>XP_006724404 Length = 1442 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSLAAVR 8 SSLAAVR Sbjct: 1167 SSLAAVR 1173>XP_006724403 Length = 2449 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSLAAVR 8 SSLAAVR Sbjct: 1048 SSLAAVR 1054>XP_005261845 Length = 2568 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSLAAVR 8 SSLAAVR Sbjct: 1167 SSLAAVR 1173>XP_005261844 Length = 2568 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSLAAVR 8 SSLAAVR Sbjct: 1167 SSLAAVR 1173>XP_005261843 Length = 2568 Score = 15.8 bits (29), Expect = 7355 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSLAAVR 8 SSLAAVR Sbjct: 1167 SSLAAVR 1173>XP_005256867 Length = 457 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSSLAAVR 8 LSSL+A+R Sbjct: 332 LSSLSAIR 339>XP_006721647 Length = 476 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSSLAAVR 8 LSSL+A+R Sbjct: 351 LSSLSAIR 358>XP_006721646 Length = 542 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSSLAAVR 8 LSSL+A+R Sbjct: 351 LSSLSAIR 358>XP_005245743 Length = 618 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSLAAVRH 9 SSLAA+ H Sbjct: 205 SSLAAILH 212>XP_005245742 Length = 631 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSLAAVRH 9 SSLAA+ H Sbjct: 127 SSLAAILH 134>XP_006711757 Length = 631 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSLAAVRH 9 SSLAA+ H Sbjct: 127 SSLAAILH 134>XP_005245741 Length = 631 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SSLAAVRH 9 SSLAA+ H Sbjct: 127 SSLAAILH 134>NP_997465 Length = 538 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 SLAAVRH 9 SLAA RH Sbjct: 13 SLAAYRH 19Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.324 0.122 0.309 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 296,706 Number of extensions: 408 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |