Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 17 2528 NP_996772 17 4312 NP_997719 16 5631 NP_940927 15 9605 NP_006184 15 9605 XP_006720560 15 9605 XP_005254961 15 9605 XP_005254960 15 9605 XP_005254959 15 9605 XP_005250454 15 9605 NP_001004760 15 9605>NP_004295 Length = 1620 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LSRVLKVGS 9 LSRVLK GS Sbjct: 123 LSRVLKGGS 131>NP_996772 Length = 889 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 LSRVLKVGS 9 +SRVL+VG+ Sbjct: 874 MSRVLQVGA 882>NP_997719 Length = 291 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 LSRVLKV 7 LSRVLKV Sbjct: 177 LSRVLKV 183>NP_940927 Length = 1343 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RVLKVGS 9 RVLK GS Sbjct: 258 RVLKTGS 264>NP_006184 Length = 343 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSRVLKVGS 9 +SR+LKV + Sbjct: 35 ISRILKVSN 43>XP_006720560 Length = 1313 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RVLKVGS 9 RVLK GS Sbjct: 258 RVLKTGS 264>XP_005254961 Length = 1342 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RVLKVGS 9 RVLK GS Sbjct: 258 RVLKTGS 264>XP_005254960 Length = 1342 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RVLKVGS 9 RVLK GS Sbjct: 258 RVLKTGS 264>XP_005254959 Length = 1343 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RVLKVGS 9 RVLK GS Sbjct: 258 RVLKTGS 264>XP_005250454 Length = 348 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSRVLKVGS 9 +SR+LKV + Sbjct: 43 ISRILKVSN 51>NP_001004760 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 SRVLKVG 8 SR++K+G Sbjct: 148 SRIIKIG 154Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.135 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 316,956 Number of extensions: 349 Number of successful extensions: 11 Number of sequences better than 10000.0: 11 Number of HSP's gapped: 11 Number of HSP's successfully gapped: 11 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |