Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 20 299 XP_006716142 20 299 XP_005250088 20 299 XP_006716141 20 299 XP_005250085 20 299 XP_006716140 20 299 XP_005250084 20 299 XP_005250083 20 299 XP_005250082 20 299 NP_056216 18 1935 NP_001091886 18 1935 XP_006719521 18 1935 XP_006719520 18 1935 XP_006719519 18 1935 XP_005269025 18 1935 XP_006719518 18 1935 XP_006719517 18 1935 NP_005679 17 4312 XP_005265966 17 4312 XP_005247116 17 4312 XP_005247115 17 4312 NP_612377 15 9605 NP_009041 15 9605 NP_001278212 15 9605 NP_001078943 15 9605 NP_057613 15 9605 NP_775820 15 9605 NP_001192246 15 9605 XP_006722135 15 9605 XP_005268084 15 9605 XP_006719899 15 9605 XP_006719898 15 9605 XP_006719897 15 9605 XP_006719895 15 9605 XP_005266476 15 9605 NP_892015 15 9605 NP_036336 15 9605>NP_733751 Length = 4911 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSMETPART 9 LSMETPA+T Sbjct: 3707 LSMETPAKT 3715>XP_006716142 Length = 4927 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSMETPART 9 LSMETPA+T Sbjct: 3724 LSMETPAKT 3732>XP_005250088 Length = 4928 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSMETPART 9 LSMETPA+T Sbjct: 3724 LSMETPAKT 3732>XP_006716141 Length = 4959 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSMETPART 9 LSMETPA+T Sbjct: 3724 LSMETPAKT 3732>XP_005250085 Length = 4979 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSMETPART 9 LSMETPA+T Sbjct: 3724 LSMETPAKT 3732>XP_006716140 Length = 4982 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSMETPART 9 LSMETPA+T Sbjct: 3724 LSMETPAKT 3732>XP_005250084 Length = 4982 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSMETPART 9 LSMETPA+T Sbjct: 3724 LSMETPAKT 3732>XP_005250083 Length = 4982 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSMETPART 9 LSMETPA+T Sbjct: 3723 LSMETPAKT 3731>XP_005250082 Length = 4983 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSMETPART 9 LSMETPA+T Sbjct: 3724 LSMETPAKT 3732>NP_056216 Length = 991 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SMETPART 9 S ETPART Sbjct: 547 SSETPART 554>NP_001091886 Length = 954 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SMETPART 9 S ETPART Sbjct: 510 SSETPART 517>XP_006719521 Length = 944 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SMETPART 9 S ETPART Sbjct: 500 SSETPART 507>XP_006719520 Length = 950 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SMETPART 9 S ETPART Sbjct: 506 SSETPART 513>XP_006719519 Length = 968 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SMETPART 9 S ETPART Sbjct: 524 SSETPART 531>XP_005269025 Length = 974 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SMETPART 9 S ETPART Sbjct: 530 SSETPART 537>XP_006719518 Length = 981 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SMETPART 9 S ETPART Sbjct: 537 SSETPART 544>XP_006719517 Length = 1005 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SMETPART 9 S ETPART Sbjct: 561 SSETPART 568>NP_005679 Length = 1437 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSMETPAR 8 LS+E PAR Sbjct: 1170 LSLEAPAR 1177>XP_005265966 Length = 891 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 METPAR 8 METPAR Sbjct: 414 METPAR 419>XP_005247116 Length = 1437 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSMETPAR 8 LS+E PAR Sbjct: 1170 LSLEAPAR 1177>XP_005247115 Length = 1437 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSMETPAR 8 LS+E PAR Sbjct: 1170 LSLEAPAR 1177>NP_612377 Length = 878 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSMETPAR 8 LSME PA+ Sbjct: 56 LSMEYPAQ 63>NP_009041 Length = 2627 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LSMETPART 9 +++E P+RT Sbjct: 2455 INLENPSRT 2463>NP_001278212 Length = 237 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SMETPAR 8 S+ETP R Sbjct: 56 SLETPVR 62>NP_001078943 Length = 237 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SMETPAR 8 S+ETP R Sbjct: 56 SLETPVR 62>NP_057613 Length = 1188 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 METPART 9 +E PART Sbjct: 51 LEAPART 57>NP_775820 Length = 374 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SMETPAR 8 SME PAR Sbjct: 307 SMEHPAR 313>NP_001192246 Length = 270 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSMETPART 9 L++E P+RT Sbjct: 51 LAVEMPSRT 59>XP_006722135 Length = 596 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 METPART 9 ME P+RT Sbjct: 1 MEAPSRT 7>XP_005268084 Length = 2627 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LSMETPART 9 +++E P+RT Sbjct: 2455 INLENPSRT 2463>XP_006719899 Length = 677 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 METPART 9 +E PART Sbjct: 11 LEAPART 17>XP_006719898 Length = 763 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 METPART 9 +E PART Sbjct: 11 LEAPART 17>XP_006719897 Length = 1148 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 METPART 9 +E PART Sbjct: 11 LEAPART 17>XP_006719895 Length = 1082 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 METPART 9 +E PART Sbjct: 11 LEAPART 17>XP_005266476 Length = 1148 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 METPART 9 +E PART Sbjct: 11 LEAPART 17>NP_892015 Length = 269 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSMETPART 9 L++E P+RT Sbjct: 50 LAVEMPSRT 58>NP_036336 Length = 822 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SMETPAR 8 SM+TP R Sbjct: 244 SMQTPVR 250Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.114 0.296 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 812,886 Number of extensions: 836 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |