Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002115 17 3301 NP_001234 17 3301 NP_001268359 17 3301 NP_056007 17 3301 NP_055055 17 3301 XP_006711112 17 3301 NP_001138727 17 4312 NP_001093326 17 4312 NP_001093327 17 4312 NP_003630 17 4312 XP_005274821 17 4312 XP_005274820 17 4312 XP_006724916 17 4312 XP_005274817 17 4312 NP_997468 16 5631 NP_001276054 16 5631 NP_002116 16 7355 NP_699171 16 7355 NP_068818 16 7355 XP_005252364 16 7355 XP_005270503 16 7355 XP_005270502 16 7355 XP_006710306 16 7355 XP_006710237 16 7355 NP_001230894 16 7355 NP_001035987 15 9605 NP_001177396 15 9605 XP_006723282 15 9605 XP_006720939 15 9605 XP_006720938 15 9605 XP_005263896 15 9605 XP_005263895 15 9605 XP_005263893 15 9605 NP_036599 15 9605>NP_002115 Length = 266 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSAPLALS 8 LS+PLALS Sbjct: 22 LSSPLALS 29>NP_001234 Length = 595 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SAPLALSS 9 SAP+ALSS Sbjct: 369 SAPVALSS 376>NP_001268359 Length = 483 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SAPLALSS 9 SAP+ALSS Sbjct: 258 SAPVALSS 265>NP_056007 Length = 1216 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SAPLALSS 9 SAPL+LSS Sbjct: 1181 SAPLSLSS 1188>NP_055055 Length = 676 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 LSAPLALS 8 +SAPLALS Sbjct: 297 VSAPLALS 304>XP_006711112 Length = 545 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SAPLALSS 9 SAP+ALSS Sbjct: 320 SAPVALSS 327>NP_001138727 Length = 320 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSAPLALSS 9 LS+PLAL S Sbjct: 276 LSSPLALPS 284>NP_001093326 Length = 487 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSAPLALSS 9 LS+PLAL S Sbjct: 443 LSSPLALPS 451>NP_001093327 Length = 419 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSAPLALSS 9 LS+PLAL S Sbjct: 375 LSSPLALPS 383>NP_003630 Length = 419 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSAPLALSS 9 LS+PLAL S Sbjct: 375 LSSPLALPS 383>XP_005274821 Length = 418 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSAPLALSS 9 LS+PLAL S Sbjct: 374 LSSPLALPS 382>XP_005274820 Length = 419 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSAPLALSS 9 LS+PLAL S Sbjct: 375 LSSPLALPS 383>XP_006724916 Length = 461 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSAPLALSS 9 LS+PLAL S Sbjct: 417 LSSPLALPS 425>XP_005274817 Length = 486 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSAPLALSS 9 LS+PLAL S Sbjct: 442 LSSPLALPS 450>NP_997468 Length = 515 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSAPLALSS 9 L APL LSS Sbjct: 443 LEAPLMLSS 451>NP_001276054 Length = 515 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LSAPLALSS 9 L APL LSS Sbjct: 443 LEAPLMLSS 451>NP_002116 Length = 266 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSAPLALS 8 LS+PLAL+ Sbjct: 22 LSSPLALA 29>NP_699171 Length = 722 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSAPLALSS 9 LSAPL+ SS Sbjct: 470 LSAPLSPSS 478>NP_068818 Length = 266 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSAPLALS 8 LS+PLAL+ Sbjct: 22 LSSPLALA 29>XP_005252364 Length = 603 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSAPLALSS 9 L+AP ALSS Sbjct: 67 LAAPPALSS 75>XP_005270503 Length = 754 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSAPLALSS 9 LSAPL+ SS Sbjct: 502 LSAPLSPSS 510>XP_005270502 Length = 763 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LSAPLALSS 9 LSAPL+ SS Sbjct: 502 LSAPLSPSS 510>XP_006710306 Length = 325 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSAPLALS 8 LS+PLAL+ Sbjct: 22 LSSPLALA 29>XP_006710237 Length = 274 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSAPLALS 8 LS+PLAL+ Sbjct: 22 LSSPLALA 29>NP_001230894 Length = 266 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LSAPLALS 8 LS+PLAL+ Sbjct: 22 LSSPLALA 29>NP_001035987 Length = 410 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 APLALSS 9 APLALS+ Sbjct: 230 APLALST 236>NP_001177396 Length = 1346 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 APLALSS 9 +PLALSS Sbjct: 604 SPLALSS 610>XP_006723282 Length = 410 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 APLALSS 9 APLALS+ Sbjct: 230 APLALST 236>XP_006720939 Length = 346 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSAPLALSS 9 LS P+ LSS Sbjct: 156 LSVPVTLSS 164>XP_006720938 Length = 379 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSAPLALSS 9 LS P+ LSS Sbjct: 156 LSVPVTLSS 164>XP_005263896 Length = 482 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LSAPLALS 8 +S+P+ALS Sbjct: 26 ISSPMALS 33>XP_005263895 Length = 482 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LSAPLALS 8 +S+P+ALS Sbjct: 26 ISSPMALS 33>XP_005263893 Length = 480 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LSAPLALS 8 +S+P+ALS Sbjct: 26 ISSPMALS 33>NP_036599 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LSAPLALSS 9 LS P+ LSS Sbjct: 131 LSVPVTLSS 139Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.304 0.115 0.274 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 546,807 Number of extensions: 906 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |