Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 16 5631 NP_001137254 16 5631 NP_057678 16 5631 NP_001136013 16 7355 NP_057032 16 7355 XP_005260183 16 7355 XP_006715167 16 7355 XP_005249215 16 7355 XP_006715166 16 7355 XP_006715165 16 7355 XP_005249214 16 7355 XP_005249213 16 7355 NP_001177693 16 7355 NP_149014 16 7355 NP_038478 15 9605 NP_001276904 15 9605 NP_659452 15 9605 NP_001091985 15 9605 XP_006712537 15 9605 XP_006712536 15 9605 XP_005246557 15 9605 XP_006712535 15 9605 XP_006712534 15 9605 XP_006712533 15 9605 XP_006712532 15 9605 XP_006712531 15 9605 XP_006712530 15 9605 XP_006712529 15 9605 XP_006712528 15 9605 XP_006712527 15 9605 XP_005246549 15 9605 XP_006712526 15 9605 XP_006712525 15 9605 XP_005246546 15 9605 XP_006712524 15 9605 XP_005246545 15 9605>NP_004295 Length = 1620 Score = 16.2 bits (30), Expect = 5631 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LSAAICASQ 9 LSAAI ASQ Sbjct: 204 LSAAIRASQ 212>NP_001137254 Length = 146 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSAAICASQ 9 LSAA+C ++ Sbjct: 18 LSAAVCRAE 26>NP_057678 Length = 201 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSAAICASQ 9 LSAA+C ++ Sbjct: 18 LSAAVCRAE 26>NP_001136013 Length = 401 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSAAICAS 8 +SAAIC S Sbjct: 200 VSAAICMS 207>NP_057032 Length = 401 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSAAICAS 8 +SAAIC S Sbjct: 200 VSAAICMS 207>XP_005260183 Length = 668 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAAICASQ 9 SAA+C S+ Sbjct: 388 SAAVCLSE 395>XP_006715167 Length = 285 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSAAICAS 8 +SAAIC S Sbjct: 202 VSAAICMS 209>XP_005249215 Length = 369 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSAAICAS 8 +SAAIC S Sbjct: 168 VSAAICMS 175>XP_006715166 Length = 372 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSAAICAS 8 +SAAIC S Sbjct: 202 VSAAICMS 209>XP_006715165 Length = 401 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSAAICAS 8 +SAAIC S Sbjct: 200 VSAAICMS 207>XP_005249214 Length = 401 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSAAICAS 8 +SAAIC S Sbjct: 200 VSAAICMS 207>XP_005249213 Length = 403 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSAAICAS 8 +SAAIC S Sbjct: 202 VSAAICMS 209>NP_001177693 Length = 176 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AICASQ 9 A+CASQ Sbjct: 6 AVCASQ 11>NP_149014 Length = 735 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SAAICASQ 9 SAA+C S+ Sbjct: 455 SAAVCLSE 462>NP_038478 Length = 2168 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1143 LSAAVC 1148>NP_001276904 Length = 2132 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1107 LSAAVC 1112>NP_659452 Length = 343 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 LSAAICA 7 LSA +CA Sbjct: 159 LSAVVCA 165>NP_001091985 Length = 343 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 LSAAICA 7 LSA +CA Sbjct: 159 LSAVVCA 165>XP_006712537 Length = 1952 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1154 LSAAVC 1159>XP_006712536 Length = 2082 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1022 LSAAVC 1027>XP_005246557 Length = 2095 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1035 LSAAVC 1040>XP_006712535 Length = 2095 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1035 LSAAVC 1040>XP_006712534 Length = 2114 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1054 LSAAVC 1059>XP_006712533 Length = 2116 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1056 LSAAVC 1061>XP_006712532 Length = 2141 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1116 LSAAVC 1121>XP_006712531 Length = 2169 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1109 LSAAVC 1114>XP_006712530 Length = 2176 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1116 LSAAVC 1121>XP_006712529 Length = 2179 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1154 LSAAVC 1159>XP_006712528 Length = 2180 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1120 LSAAVC 1125>XP_006712527 Length = 2203 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1143 LSAAVC 1148>XP_005246549 Length = 2212 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1152 LSAAVC 1157>XP_006712526 Length = 2212 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1152 LSAAVC 1157>XP_006712525 Length = 2212 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1152 LSAAVC 1157>XP_005246546 Length = 2214 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1154 LSAAVC 1159>XP_006712524 Length = 2214 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1154 LSAAVC 1159>XP_005246545 Length = 2214 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LSAAIC 6 LSAA+C Sbjct: 1154 LSAAVC 1159Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.114 0.311 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 528,358 Number of extensions: 470 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |